Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10235

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
1,954,508	-		LU632_RS10220	0.68	-2.3
1,954,509	+		LU632_RS10220	0.68	-1.7
1,954,509	+		LU632_RS10220	0.68	+0.6
1,954,510	-		LU632_RS10220	0.68	-1.0
1,954,561	-		LU632_RS10220	0.73	-0.0
1,954,642	-		LU632_RS10220	0.81	-1.4
1,954,647	+		LU632_RS10220	0.82	+0.1
1,954,648	-		LU632_RS10220	0.82	+2.6
1,954,699	-		LU632_RS10220	0.87	+0.5
1,954,772	+				+1.5
1,955,605	+				+0.0
1,955,727	+		LU632_RS10235	0.12	+0.3
1,955,728	-		LU632_RS10235	0.12	-0.3
1,955,733	+		LU632_RS10235	0.12	-0.6
1,955,734	-		LU632_RS10235	0.12	-1.5
1,955,806	-		LU632_RS10235	0.16	-0.8
1,955,807	+		LU632_RS10235	0.16	-0.0
1,955,807	+		LU632_RS10235	0.16	-0.0
1,955,807	+		LU632_RS10235	0.16	-0.7
1,955,807	+		LU632_RS10235	0.16	-0.0
1,955,808	-		LU632_RS10235	0.16	-2.9
1,955,808	-		LU632_RS10235	0.16	+0.8
1,955,863	-		LU632_RS10235	0.18	-0.3
1,955,863	-		LU632_RS10235	0.18	+1.9
1,955,998	-		LU632_RS10235	0.25	-3.2
1,956,048	+		LU632_RS10235	0.27	+1.3
1,956,048	+		LU632_RS10235	0.27	+0.5
1,956,048	+		LU632_RS10235	0.27	+1.8
1,956,049	-		LU632_RS10235	0.27	-0.4
1,956,049	-		LU632_RS10235	0.27	+2.1
1,956,238	+		LU632_RS10235	0.36	-0.7
1,956,238	+		LU632_RS10235	0.36	-0.9
1,956,239	-		LU632_RS10235	0.36	+0.3
1,956,331	+		LU632_RS10235	0.40	-2.1
1,956,373	+		LU632_RS10235	0.42	-0.2
1,956,381	+		LU632_RS10235	0.43	-2.0
1,956,442	+		LU632_RS10235	0.45	-2.0
1,956,443	-		LU632_RS10235	0.46	-1.7
1,956,484	-		LU632_RS10235	0.47	-1.0
1,956,484	-		LU632_RS10235	0.47	-1.0
1,956,504	+		LU632_RS10235	0.48	+0.3
1,956,505	-		LU632_RS10235	0.48	-1.0
1,956,508	+		LU632_RS10235	0.49	+1.3
1,956,508	+		LU632_RS10235	0.49	-0.6
1,956,508	+		LU632_RS10235	0.49	-0.5
1,956,508	+		LU632_RS10235	0.49	-0.0
1,956,508	+		LU632_RS10235	0.49	-0.4
1,956,508	+		LU632_RS10235	0.49	-0.7
1,956,512	+		LU632_RS10235	0.49	+2.4
1,956,512	+		LU632_RS10235	0.49	+0.5
1,956,512	+		LU632_RS10235	0.49	+0.6
1,956,512	+		LU632_RS10235	0.49	+0.0
1,956,512	+		LU632_RS10235	0.49	-1.9
1,956,513	-		LU632_RS10235	0.49	-0.0
1,956,513	-		LU632_RS10235	0.49	+0.6
1,956,513	-		LU632_RS10235	0.49	+0.2
1,956,589	+		LU632_RS10235	0.52	+0.1
1,956,590	-		LU632_RS10235	0.52	-1.3
1,956,590	-		LU632_RS10235	0.52	-0.7
1,956,658	+		LU632_RS10235	0.56	+1.9
1,956,691	-		LU632_RS10235	0.57	+0.3
1,956,691	-		LU632_RS10235	0.57	+0.6
1,956,694	+		LU632_RS10235	0.57	-0.1
1,956,695	-		LU632_RS10235	0.57	-0.6
1,956,695	-		LU632_RS10235	0.57	+0.3
1,956,752	+		LU632_RS10235	0.60	+1.1
1,956,753	-		LU632_RS10235	0.60	+1.1
1,956,794	+		LU632_RS10235	0.62	-0.3
1,956,838	+		LU632_RS10235	0.64	-0.3
1,956,838	+		LU632_RS10235	0.64	-0.7
1,956,838	+		LU632_RS10235	0.64	+0.5
1,956,838	+		LU632_RS10235	0.64	-0.5
1,956,838	+		LU632_RS10235	0.64	+1.0
1,956,838	+		LU632_RS10235	0.64	+2.0
1,956,839	-		LU632_RS10235	0.64	-0.8
1,956,839	-		LU632_RS10235	0.64	-0.2
1,956,850	-		LU632_RS10235	0.64	+0.1
1,956,949	-		LU632_RS10235	0.69	-0.8
1,957,021	-		LU632_RS10235	0.72	+0.3
1,957,026	-		LU632_RS10235	0.73	-1.7
1,957,138	-		LU632_RS10235	0.78	+0.0
1,957,141	+		LU632_RS10235	0.78	-0.5
1,957,148	+		LU632_RS10235	0.78	-1.0
1,957,150	+		LU632_RS10235	0.78	+0.3
1,957,204	+		LU632_RS10235	0.81	-0.6
1,957,204	+		LU632_RS10235	0.81	+0.3
1,957,273	+		LU632_RS10235	0.84	+0.1
1,957,274	-		LU632_RS10235	0.84	-0.7
1,957,274	-		LU632_RS10235	0.84	-1.9
1,957,274	-		LU632_RS10235	0.84	-1.8
1,957,274	-		LU632_RS10235	0.84	+0.5
1,957,310	-		LU632_RS10235	0.86	+1.3
1,957,317	-		LU632_RS10235	0.86	-1.0
1,957,330	+		LU632_RS10235	0.87	+0.0
1,957,394	-		LU632_RS10235	0.90	-0.0
1,957,394	-		LU632_RS10235	0.90	+0.3
1,957,429	+				+2.1
1,957,430	-				+0.1
1,957,431	+				-0.6
1,957,432	-				+0.1
1,957,432	-				-0.7
1,957,555	+				+0.2
1,957,555	+				-0.7
1,957,556	-				+0.3
1,957,556	-				-1.3
1,957,556	-				+1.3
1,958,146	-				+0.7
1,958,233	+		LU632_RS10245	0.37	-1.9
1,958,233	+		LU632_RS10245	0.37	+1.3
1,958,278	+		LU632_RS10245	0.64	-0.9
1,958,279	-		LU632_RS10245	0.64	-1.3
1,958,279	-		LU632_RS10245	0.64	-0.7
1,958,294	-		LU632_RS10245	0.73	+0.3
1,958,367	+				+0.8
1,958,367	+				+0.3
1,958,372	-				+0.6
1,958,379	-				+1.9
1,958,390	+				-0.1
1,958,441	-				+0.5
1,958,441	-				+3.4
1,958,466	-				+0.0
1,958,492	-				+0.0
1,958,492	-				+1.0
1,958,494	+				+1.1
1,958,495	-				-0.1
1,958,495	-				+0.1
1,958,495	-				-0.2
1,958,553	+				-1.2
1,958,567	-				+0.7
1,958,572	-				+1.0
1,958,582	+				-1.7
1,958,582	+				+0.5
1,958,586	+				+0.9
1,958,587	-				+0.5
1,958,587	-				-0.3