Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10120

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
1,933,018	-				+0.9
1,933,018	-				-0.4
1,933,018	-				-0.9
1,933,018	-				+1.2
1,933,019	+				-0.5
1,933,143	+				+0.1
1,933,144	-				+0.5
1,933,177	+				+0.7
1,933,319	+				-0.3
1,933,415	-				+0.8
1,933,462	-				+0.0
1,933,594	-				+2.1
1,933,594	-				-0.1
1,933,609	-				-1.0
1,933,670	+				+0.3
1,933,670	+				+0.8
1,933,724	-				+0.3
1,933,725	+				+3.4
1,933,741	-				-0.3
1,933,813	+				-2.4
1,933,813	+				-1.4
1,933,814	-				+0.5
1,933,814	-				+0.7
1,933,823	-				+0.6
1,933,848	+				-0.2
1,933,848	+				-0.9
1,933,849	-				-0.3
1,933,850	+				+0.6
1,933,850	+				-1.5
1,933,851	-				+2.1
1,933,851	-				+0.7
1,933,851	-				+0.1
1,933,873	+				+0.0
1,933,876	-				+0.3
1,933,967	-				+0.5
1,934,075	+				+1.0
1,934,075	+				-1.0
1,934,128	+				+0.1
1,934,176	+	agp	LU632_RS10120	0.11	-1.0
1,934,176	+	agp	LU632_RS10120	0.11	+0.7
1,934,220	+	agp	LU632_RS10120	0.14	+0.8
1,934,227	+	agp	LU632_RS10120	0.14	-0.1
1,934,249	+	agp	LU632_RS10120	0.16	-0.3
1,934,250	-	agp	LU632_RS10120	0.16	-1.9
1,934,250	-	agp	LU632_RS10120	0.16	-1.9
1,934,250	-	agp	LU632_RS10120	0.16	-1.0
1,934,250	-	agp	LU632_RS10120	0.16	+0.9
1,934,295	+	agp	LU632_RS10120	0.19	+1.0
1,934,330	+	agp	LU632_RS10120	0.21	+1.0
1,934,336	+	agp	LU632_RS10120	0.22	-0.5
1,934,357	-	agp	LU632_RS10120	0.23	+0.9
1,934,357	-	agp	LU632_RS10120	0.23	-1.8
1,934,357	-	agp	LU632_RS10120	0.23	+0.5
1,934,452	-	agp	LU632_RS10120	0.30	+1.4
1,934,455	+	agp	LU632_RS10120	0.30	+0.8
1,934,464	+	agp	LU632_RS10120	0.30	+1.0
1,934,465	-	agp	LU632_RS10120	0.30	-0.7
1,934,465	-	agp	LU632_RS10120	0.30	-0.2
1,934,576	+	agp	LU632_RS10120	0.38	-0.3
1,934,577	-	agp	LU632_RS10120	0.38	+0.7
1,934,596	+	agp	LU632_RS10120	0.39	+1.0
1,934,597	-	agp	LU632_RS10120	0.39	+0.3
1,934,597	-	agp	LU632_RS10120	0.39	-2.2
1,934,597	-	agp	LU632_RS10120	0.39	-0.7
1,934,717	-	agp	LU632_RS10120	0.47	+1.3
1,934,717	-	agp	LU632_RS10120	0.47	+0.5
1,934,729	+	agp	LU632_RS10120	0.48	-0.5
1,934,729	+	agp	LU632_RS10120	0.48	+0.8
1,934,729	+	agp	LU632_RS10120	0.48	-0.7
1,934,803	+	agp	LU632_RS10120	0.53	-0.1
1,934,804	-	agp	LU632_RS10120	0.53	+1.8
1,935,095	+	agp	LU632_RS10120	0.73	+0.6
1,935,095	+	agp	LU632_RS10120	0.73	+0.5
1,935,095	+	agp	LU632_RS10120	0.73	-0.7
1,935,095	+	agp	LU632_RS10120	0.73	+2.1
1,935,096	-	agp	LU632_RS10120	0.73	+0.1
1,935,096	-	agp	LU632_RS10120	0.73	+1.5
1,935,096	-	agp	LU632_RS10120	0.73	+1.5
1,935,096	-	agp	LU632_RS10120	0.73	+0.3
1,935,101	+	agp	LU632_RS10120	0.73	-0.3
1,935,121	-	agp	LU632_RS10120	0.75	-0.6
1,935,121	-	agp	LU632_RS10120	0.75	+0.7
1,935,125	-	agp	LU632_RS10120	0.75	+0.3
1,935,125	-	agp	LU632_RS10120	0.75	+0.2
1,935,227	-	agp	LU632_RS10120	0.82	-1.7
1,935,290	-	agp	LU632_RS10120	0.86	+0.3
1,935,487	+				+1.0
1,935,646	+				+0.5
1,935,646	+				-0.2
1,935,676	+				-2.0
1,935,803	+		LU632_RS10125	0.18	+0.3
1,935,828	+		LU632_RS10125	0.20	-0.4
1,935,828	+		LU632_RS10125	0.20	-0.2
1,935,829	-		LU632_RS10125	0.20	+0.0
1,935,875	-		LU632_RS10125	0.23	+0.4
1,936,082	+		LU632_RS10125	0.38	-0.3
1,936,162	+		LU632_RS10125	0.44	+0.4
1,936,229	+		LU632_RS10125	0.49	-0.2
1,936,229	+		LU632_RS10125	0.49	+1.1
1,936,229	+		LU632_RS10125	0.49	-0.9
1,936,230	-		LU632_RS10125	0.49	-0.1
1,936,230	-		LU632_RS10125	0.49	-0.6
1,936,230	-		LU632_RS10125	0.49	+0.3
1,936,230	-		LU632_RS10125	0.49	-0.5
1,936,230	-		LU632_RS10125	0.49	+3.7
1,936,270	-		LU632_RS10125	0.52	-1.0
1,936,297	+		LU632_RS10125	0.54	+1.9
1,936,378	+		LU632_RS10125	0.60	+1.3