Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09335

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
1,765,950	+				-1.0
1,765,952	+				+0.6
1,765,952	+				+0.8
1,765,952	+				+0.3
1,766,046	+		LU632_RS09330	0.13	-1.6
1,766,111	+		LU632_RS09330	0.21	-0.3
1,766,111	+		LU632_RS09330	0.21	+0.2
1,766,283	-		LU632_RS09330	0.41	-1.4
1,766,384	+		LU632_RS09330	0.52	-0.5
1,766,385	-		LU632_RS09330	0.52	+0.1
1,766,385	-		LU632_RS09330	0.52	-3.6
1,766,429	-		LU632_RS09330	0.58	+1.0
1,766,431	+		LU632_RS09330	0.58	+0.0
1,766,432	-		LU632_RS09330	0.58	-2.2
1,766,565	+		LU632_RS09330	0.73	-0.3
1,766,565	+		LU632_RS09330	0.73	-0.5
1,766,566	-		LU632_RS09330	0.73	-2.0
1,766,677	-		LU632_RS09330	0.86	-1.0
1,766,876	-				+0.1
1,766,899	+				-0.9
1,766,900	-				+0.2
1,767,074	+				+1.3
1,767,084	-				-0.2
1,767,084	-				+0.0
1,767,093	-				+1.4
1,767,093	-				-1.1
1,767,105	-				+0.2
1,767,345	+		LU632_RS09335	0.22	-1.0
1,767,346	-		LU632_RS09335	0.22	-0.2
1,767,348	+		LU632_RS09335	0.22	-0.9
1,767,349	-		LU632_RS09335	0.23	+0.5
1,767,505	+		LU632_RS09335	0.31	-1.0
1,767,506	-		LU632_RS09335	0.31	+0.1
1,767,506	-		LU632_RS09335	0.31	-0.2
1,767,553	+		LU632_RS09335	0.33	+0.0
1,767,659	+		LU632_RS09335	0.39	+0.1
1,767,660	-		LU632_RS09335	0.39	+1.6
1,767,660	-		LU632_RS09335	0.39	+1.9
1,767,660	-		LU632_RS09335	0.39	-0.5
1,767,743	+		LU632_RS09335	0.43	+1.0
1,767,743	+		LU632_RS09335	0.43	-0.7
1,767,743	+		LU632_RS09335	0.43	+1.4
1,767,744	-		LU632_RS09335	0.43	+1.4
1,767,761	+		LU632_RS09335	0.44	+0.2
1,767,761	+		LU632_RS09335	0.44	+0.9
1,767,761	+		LU632_RS09335	0.44	-0.4
1,767,762	-		LU632_RS09335	0.44	-0.3
1,767,765	-		LU632_RS09335	0.44	-1.5
1,767,780	+		LU632_RS09335	0.45	-0.4
1,767,825	-		LU632_RS09335	0.48	-0.3
1,767,875	-		LU632_RS09335	0.50	-1.0
1,767,899	+		LU632_RS09335	0.52	-1.0
1,767,906	-		LU632_RS09335	0.52	-0.2
1,767,942	-		LU632_RS09335	0.54	-0.6
1,768,031	+		LU632_RS09335	0.58	-0.6
1,768,166	+		LU632_RS09335	0.66	-0.2
1,768,167	-		LU632_RS09335	0.66	+0.9
1,768,167	-		LU632_RS09335	0.66	-0.3
1,768,310	+		LU632_RS09335	0.73	+0.3
1,768,310	+		LU632_RS09335	0.73	+1.1
1,768,545	-		LU632_RS09335	0.86	+1.1
1,768,629	-				+1.4
1,768,629	-				-0.4
1,768,664	+				-0.0
1,768,693	+				+2.2
1,768,693	+				+0.2
1,768,856	-				-0.2
1,768,856	-				+1.0
1,768,929	+				-1.1
1,768,929	+				-0.3
1,768,929	+				-0.3
1,769,066	+	idi	LU632_RS09340	0.19	-0.4
1,769,117	+	idi	LU632_RS09340	0.28	-1.0
1,769,117	+	idi	LU632_RS09340	0.28	+0.4
1,769,118	-	idi	LU632_RS09340	0.29	+1.6
1,769,121	+	idi	LU632_RS09340	0.29	-0.8
1,769,121	+	idi	LU632_RS09340	0.29	-0.6
1,769,121	+	idi	LU632_RS09340	0.29	+1.6
1,769,122	-	idi	LU632_RS09340	0.29	+0.2
1,769,122	-	idi	LU632_RS09340	0.29	-0.9
1,769,122	-	idi	LU632_RS09340	0.29	+1.5
1,769,143	+	idi	LU632_RS09340	0.33	+0.1
1,769,187	-	idi	LU632_RS09340	0.41	-1.0
1,769,309	+	idi	LU632_RS09340	0.63	+0.8
1,769,309	+	idi	LU632_RS09340	0.63	-1.0
1,769,417	+	idi	LU632_RS09340	0.82	-0.4
1,769,418	-	idi	LU632_RS09340	0.82	+1.0