Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09320

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
1,761,618	+				+0.1
1,761,650	+				+0.9
1,761,726	-	dld	LU632_RS09320	0.11	+1.0
1,761,749	+	dld	LU632_RS09320	0.13	-2.2
1,761,750	-	dld	LU632_RS09320	0.13	+2.4
1,761,830	+	dld	LU632_RS09320	0.19	+0.4
1,761,850	+	dld	LU632_RS09320	0.20	+0.1
1,761,851	-	dld	LU632_RS09320	0.20	+0.9
1,761,874	+	dld	LU632_RS09320	0.22	-0.2
1,761,874	+	dld	LU632_RS09320	0.22	+1.1
1,761,875	-	dld	LU632_RS09320	0.22	-0.2
1,761,875	-	dld	LU632_RS09320	0.22	+0.7
1,761,975	+	dld	LU632_RS09320	0.29	+0.4
1,761,975	+	dld	LU632_RS09320	0.29	+1.0
1,762,117	+	dld	LU632_RS09320	0.39	-0.6
1,762,142	+	dld	LU632_RS09320	0.41	-0.2
1,762,143	-	dld	LU632_RS09320	0.41	-0.2
1,762,147	+	dld	LU632_RS09320	0.41	+0.5
1,762,148	-	dld	LU632_RS09320	0.41	-0.4
1,762,171	-	dld	LU632_RS09320	0.43	+1.1
1,762,298	+	dld	LU632_RS09320	0.52	+0.5
1,762,509	+	dld	LU632_RS09320	0.67	-0.1
1,762,543	-	dld	LU632_RS09320	0.69	+1.0
1,762,687	+	dld	LU632_RS09320	0.79	+1.0
1,762,687	+	dld	LU632_RS09320	0.79	+0.1
1,762,688	-	dld	LU632_RS09320	0.79	-0.6
1,762,688	-	dld	LU632_RS09320	0.79	+0.4
1,762,689	+	dld	LU632_RS09320	0.79	-1.0
1,762,689	+	dld	LU632_RS09320	0.79	+0.2
1,762,689	+	dld	LU632_RS09320	0.79	+0.4
1,762,689	+	dld	LU632_RS09320	0.79	-1.2
1,762,689	+	dld	LU632_RS09320	0.79	-0.3
1,762,689	+	dld	LU632_RS09320	0.79	-0.6
1,762,689	+	dld	LU632_RS09320	0.79	+1.1
1,762,690	-	dld	LU632_RS09320	0.79	+1.6
1,762,690	-	dld	LU632_RS09320	0.79	-0.1
1,762,690	-	dld	LU632_RS09320	0.79	-0.0
1,762,690	-	dld	LU632_RS09320	0.79	+0.4
1,762,690	-	dld	LU632_RS09320	0.79	+3.0
1,762,690	-	dld	LU632_RS09320	0.79	-0.6
1,762,995	-				+0.5
1,762,995	-				+1.6
1,763,015	-				+1.0
1,763,051	-				-0.2
1,763,082	-				+0.3
1,763,089	-				+0.4
1,763,118	+				-0.8
1,763,118	+				+0.4
1,763,129	-				-1.0
1,763,143	+				+0.2
1,763,349	+				+0.5
1,763,402	+	bglX	LU632_RS09325	0.10	-0.5
1,763,694	+	bglX	LU632_RS09325	0.23	+1.0
1,763,801	-	bglX	LU632_RS09325	0.28	-0.5
1,763,832	+	bglX	LU632_RS09325	0.29	+0.1
1,763,833	-	bglX	LU632_RS09325	0.29	-0.2
1,763,928	+	bglX	LU632_RS09325	0.33	+0.2
1,763,929	-	bglX	LU632_RS09325	0.33	+1.0
1,763,929	-	bglX	LU632_RS09325	0.33	-0.5