Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08515

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
1,596,789	-		LU632_RS08510	0.29	+0.0
1,596,873	-		LU632_RS08510	0.36	+1.2
1,596,873	-		LU632_RS08510	0.36	+1.7
1,597,027	+		LU632_RS08510	0.49	-1.8
1,597,027	+		LU632_RS08510	0.49	+0.5
1,597,027	+		LU632_RS08510	0.49	-1.1
1,597,027	+		LU632_RS08510	0.49	-0.9
1,597,027	+		LU632_RS08510	0.49	-0.2
1,597,027	+		LU632_RS08510	0.49	+0.8
1,597,028	-		LU632_RS08510	0.49	+0.9
1,597,028	-		LU632_RS08510	0.49	-0.4
1,597,028	-		LU632_RS08510	0.49	-0.6
1,597,028	-		LU632_RS08510	0.49	-0.4
1,597,028	-		LU632_RS08510	0.49	-0.2
1,597,028	-		LU632_RS08510	0.49	-0.3
1,597,028	-		LU632_RS08510	0.49	-1.1
1,597,168	+		LU632_RS08510	0.61	+0.9
1,597,169	-		LU632_RS08510	0.62	-2.3
1,597,387	+		LU632_RS08510	0.80	+0.4
1,597,387	+		LU632_RS08510	0.80	+0.2
1,597,387	+		LU632_RS08510	0.80	+0.4
1,597,387	+		LU632_RS08510	0.80	+0.7
1,597,388	-		LU632_RS08510	0.81	-0.9
1,597,388	-		LU632_RS08510	0.81	+0.7
1,597,391	+		LU632_RS08510	0.81	+0.1
1,597,391	+		LU632_RS08510	0.81	+0.4
1,597,391	+		LU632_RS08510	0.81	+0.4
1,597,391	+		LU632_RS08510	0.81	-0.4
1,597,392	-		LU632_RS08510	0.81	+0.1
1,597,501	+				-1.1
1,597,502	-				+0.6
1,597,503	+				-0.6
1,597,503	+				+1.1
1,597,503	+				-1.1
1,597,503	+				-0.4
1,597,503	+				-1.4
1,597,504	-				-0.6
1,597,504	-				-0.1
1,597,504	-				+0.1
1,597,504	-				-0.8
1,597,504	-				+0.6
1,597,529	+				-0.8
1,597,529	+				+0.4
1,597,530	-				+0.4
1,597,621	+				-0.9
1,597,621	-				-1.1
1,597,622	-				-0.5
1,597,622	-				+4.0
1,597,682	-				-0.6
1,597,830	-				-0.1
1,598,052	+	galS	LU632_RS08515	0.28	+3.7
1,598,052	+	galS	LU632_RS08515	0.28	-0.6
1,598,052	+	galS	LU632_RS08515	0.28	-1.4
1,598,052	+	galS	LU632_RS08515	0.28	+0.4
1,598,053	-	galS	LU632_RS08515	0.29	-0.6
1,598,169	-	galS	LU632_RS08515	0.40	-0.9
1,598,218	+	galS	LU632_RS08515	0.45	+2.7
1,598,385	+	galS	LU632_RS08515	0.62	-0.9
1,598,386	-	galS	LU632_RS08515	0.62	-0.1
1,598,386	-	galS	LU632_RS08515	0.62	+0.5
1,598,386	-	galS	LU632_RS08515	0.62	-0.1
1,598,429	+	galS	LU632_RS08515	0.66	+1.1
1,598,430	-	galS	LU632_RS08515	0.66	-0.9
1,598,498	-	galS	LU632_RS08515	0.73	+0.2
1,598,643	+	galS	LU632_RS08515	0.88	+4.5
1,598,785	-				+0.4
1,598,977	+				-1.2
1,599,076	+				-1.9
1,599,084	+				-1.0
1,599,100	+				-0.6
1,599,100	+				+0.0
1,599,110	-				-0.2
1,599,157	+				-3.0
1,599,200	+				-0.6
1,599,202	+				-0.5
1,599,203	-				-2.0
1,599,203	-				-2.7
1,599,327	+	mglB	LU632_RS08520	0.22	-1.6
1,599,328	-	mglB	LU632_RS08520	0.22	+1.8
1,599,425	-	mglB	LU632_RS08520	0.32	-0.2
1,599,477	-	mglB	LU632_RS08520	0.37	-1.4
1,599,488	+	mglB	LU632_RS08520	0.39	+0.4
1,599,491	+	mglB	LU632_RS08520	0.39	-1.4
1,599,492	-	mglB	LU632_RS08520	0.39	-0.7
1,599,492	-	mglB	LU632_RS08520	0.39	-1.9
1,599,492	-	mglB	LU632_RS08520	0.39	+1.4
1,599,599	+	mglB	LU632_RS08520	0.50	+1.1
1,599,599	+	mglB	LU632_RS08520	0.50	-0.6
1,599,653	+	mglB	LU632_RS08520	0.55	+0.8
1,599,654	-	mglB	LU632_RS08520	0.55	-1.9
1,599,654	-	mglB	LU632_RS08520	0.55	+0.3
1,599,654	-	mglB	LU632_RS08520	0.55	-1.3