Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08190

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
1,541,945	+	ompC	LU632_RS08185	0.47	+0.9
1,541,946	-	ompC	LU632_RS08185	0.47	+2.0
1,542,021	+	ompC	LU632_RS08185	0.53	-1.2
1,542,022	-	ompC	LU632_RS08185	0.53	+0.8
1,542,105	-	ompC	LU632_RS08185	0.61	-0.5
1,542,110	+	ompC	LU632_RS08185	0.61	+0.5
1,542,111	-	ompC	LU632_RS08185	0.62	+0.9
1,542,162	+	ompC	LU632_RS08185	0.66	-1.0
1,542,162	+	ompC	LU632_RS08185	0.66	-0.1
1,542,165	+	ompC	LU632_RS08185	0.66	-0.2
1,542,166	-	ompC	LU632_RS08185	0.66	+1.5
1,542,173	+	ompC	LU632_RS08185	0.67	+1.2
1,542,195	+	ompC	LU632_RS08185	0.69	-0.5
1,542,195	+	ompC	LU632_RS08185	0.69	-0.6
1,542,196	-	ompC	LU632_RS08185	0.69	-0.9
1,542,196	-	ompC	LU632_RS08185	0.69	+0.7
1,542,207	+	ompC	LU632_RS08185	0.70	-0.0
1,542,207	+	ompC	LU632_RS08185	0.70	-2.1
1,542,207	+	ompC	LU632_RS08185	0.70	-0.0
1,542,210	-	ompC	LU632_RS08185	0.70	+0.7
1,542,291	+	ompC	LU632_RS08185	0.78	+0.5
1,542,394	+	ompC	LU632_RS08185	0.87	+1.6
1,542,394	+	ompC	LU632_RS08185	0.87	-1.1
1,542,405	+	ompC	LU632_RS08185	0.88	+1.5
1,542,433	-				-0.9
1,542,526	-				+3.5
1,542,538	+				+0.3
1,542,679	+				-0.3
1,542,687	-				+1.3
1,542,772	+				+0.0
1,542,800	-				-1.0
1,543,208	-	apbE	LU632_RS08190	0.29	+1.5
1,543,259	-	apbE	LU632_RS08190	0.34	-1.5
1,543,315	-	apbE	LU632_RS08190	0.40	+0.5
1,543,374	+	apbE	LU632_RS08190	0.45	+0.5
1,543,550	-	apbE	LU632_RS08190	0.62	+0.5
1,543,674	-	apbE	LU632_RS08190	0.74	-0.5
1,543,735	-	apbE	LU632_RS08190	0.80	+2.2
1,543,941	-				+0.1
1,543,963	+				+0.1
1,543,964	-				+3.0
1,543,978	+				-0.2
1,544,112	+	alkB	LU632_RS08195	0.23	+1.0
1,544,305	+	alkB	LU632_RS08195	0.53	-0.1
1,544,306	-	alkB	LU632_RS08195	0.53	+0.6
1,544,306	-	alkB	LU632_RS08195	0.53	-0.9
1,544,333	-	alkB	LU632_RS08195	0.57	+0.9
1,544,347	-	alkB	LU632_RS08195	0.59	+0.0
1,544,421	-	alkB	LU632_RS08195	0.71	-2.1
1,544,421	-	alkB	LU632_RS08195	0.71	+0.6
1,544,442	-	alkB	LU632_RS08195	0.74	+0.9
1,544,485	-	alkB	LU632_RS08195	0.81	-1.1
1,544,513	+	alkB	LU632_RS08195	0.85	-0.7
1,544,578	-				+0.6
1,544,633	+				-0.1
1,544,735	+				+0.1
1,544,735	+				-0.7
1,544,736	-				+1.1
1,544,736	-				-0.4
1,544,807	-				+1.8
1,544,814	-				-2.6
1,544,834	+				+0.5
1,544,834	+				-0.5
1,544,835	-				-0.1
1,544,855	+				+0.4
1,544,855	+				+0.3
1,544,881	+				-0.0
1,544,881	+				+0.5
1,544,913	+				-1.0
1,544,935	+				-1.0
1,544,935	+				-1.3