Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07900

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
1,474,488	+				-0.2
1,474,489	-				-1.6
1,474,501	+				-0.5
1,474,502	-				+1.7
1,475,336	-		LU632_RS07900	0.12	-2.1
1,475,336	-		LU632_RS07900	0.12	+0.8
1,475,350	+		LU632_RS07900	0.15	-1.8
1,475,351	-		LU632_RS07900	0.15	-0.8
1,475,389	-		LU632_RS07900	0.22	-0.7
1,475,389	-		LU632_RS07900	0.22	-2.9
1,475,397	+		LU632_RS07900	0.24	+1.0
1,475,441	+		LU632_RS07900	0.32	-1.3
1,475,441	+		LU632_RS07900	0.32	-1.4
1,475,447	+		LU632_RS07900	0.33	+1.6
1,475,573	+		LU632_RS07900	0.58	-0.5
1,475,583	+		LU632_RS07900	0.60	-1.3
1,475,583	+		LU632_RS07900	0.60	+0.6
1,475,583	+		LU632_RS07900	0.60	-0.3
1,475,584	-		LU632_RS07900	0.60	+0.1
1,475,636	-		LU632_RS07900	0.70	+0.1
1,475,821	+				-1.7
1,476,461	-		LU632_RS07905	0.38	+0.7