Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07725

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
1,443,002	-		LU632_RS07710	0.88	-0.1
1,443,002	-		LU632_RS07710	0.88	-0.1
1,443,004	-		LU632_RS07710	0.89	+0.0
1,443,057	+				-0.7
1,443,058	-				-1.4
1,443,060	-				+0.3
1,443,060	-				+1.2
1,443,060	-				-0.2
1,443,060	-				-0.3
1,443,077	-				+0.0
1,443,148	+				+1.4
1,443,149	-				-0.1
1,443,149	-				+0.2
1,443,149	-				+0.2
1,443,149	-				-0.5
1,443,149	-				+0.2
1,443,149	-				+0.2
1,443,232	+		LU632_RS07715	0.21	-1.2
1,443,252	+		LU632_RS07715	0.26	+0.0
1,443,253	-		LU632_RS07715	0.26	-0.2
1,443,284	+		LU632_RS07715	0.34	-1.6
1,443,285	-		LU632_RS07715	0.34	-0.9
1,443,285	-		LU632_RS07715	0.34	-0.4
1,443,340	+		LU632_RS07715	0.48	-1.0
1,443,481	-		LU632_RS07715	0.83	+0.0
1,443,535	+				-1.2
1,443,536	-				+0.2
1,443,565	-				+0.4
1,443,630	-		LU632_RS07720	0.41	+0.2
1,443,633	+		LU632_RS07720	0.42	-2.7
1,443,634	-		LU632_RS07720	0.43	-0.7
1,443,707	-		LU632_RS07720	0.81	+0.6
1,443,722	+		LU632_RS07720	0.89	-0.4
1,443,722	+		LU632_RS07720	0.89	-2.6
1,443,723	-				+0.3
1,443,904	-		LU632_RS07725	0.23	+0.1
1,443,958	+		LU632_RS07725	0.31	+0.1
1,443,959	-		LU632_RS07725	0.31	-0.3
1,443,982	-		LU632_RS07725	0.34	-0.7
1,444,003	-		LU632_RS07725	0.37	+0.5
1,444,011	+		LU632_RS07725	0.38	-0.6
1,444,011	+		LU632_RS07725	0.38	-1.2
1,444,012	-		LU632_RS07725	0.39	+0.2
1,444,045	+		LU632_RS07725	0.43	-0.6
1,444,054	-		LU632_RS07725	0.45	+0.8
1,444,079	-		LU632_RS07725	0.48	+0.1
1,444,079	-		LU632_RS07725	0.48	-1.6
1,444,081	-		LU632_RS07725	0.48	+0.3
1,444,081	-		LU632_RS07725	0.48	+0.1
1,444,081	-		LU632_RS07725	0.48	+1.4
1,444,081	-		LU632_RS07725	0.48	-2.2
1,444,081	-		LU632_RS07725	0.48	+0.3
1,444,081	-		LU632_RS07725	0.48	+1.1
1,444,144	-		LU632_RS07725	0.58	-1.2
1,444,386	-				+0.3
1,444,433	+				+0.3
1,444,433	+				-3.4
1,444,434	-				-0.8
1,444,434	-				-2.0
1,444,454	-				-1.7
1,444,454	-				-0.0
1,444,454	-				-0.2
1,444,454	-				-1.2
1,444,454	-				+0.3
1,444,454	-				+1.4
1,444,454	-				+0.5
1,444,473	-		LU632_RS07730	0.19	-0.8
1,444,473	-		LU632_RS07730	0.19	+0.4
1,444,473	-		LU632_RS07730	0.19	-0.5
1,444,531	-		LU632_RS07730	0.46	+0.2
1,444,597	+		LU632_RS07730	0.78	-0.3
1,444,597	+		LU632_RS07730	0.78	-0.9
1,444,597	+		LU632_RS07730	0.78	+1.6
1,444,597	+		LU632_RS07730	0.78	+0.7
1,444,597	+		LU632_RS07730	0.78	+0.6
1,444,597	+		LU632_RS07730	0.78	+1.3
1,444,598	-		LU632_RS07730	0.78	+0.2
1,444,599	+		LU632_RS07730	0.79	+0.1
1,444,599	+		LU632_RS07730	0.79	-0.8
1,444,599	+		LU632_RS07730	0.79	-0.6
1,444,600	-		LU632_RS07730	0.79	+0.8
1,444,609	-		LU632_RS07730	0.83	+1.6
1,444,613	-		LU632_RS07730	0.85	-0.9
1,444,669	+				-0.7
1,444,676	-				+0.8
1,444,712	+		LU632_RS07735	0.16	+0.4
1,444,714	-		LU632_RS07735	0.17	-0.9
1,444,778	-		LU632_RS07735	0.32	-0.6
1,445,012	-		LU632_RS07735	0.87	+0.4
1,445,091	+				+0.2
1,445,092	-				-0.5
1,445,092	-				+0.4
1,445,158	-		LU632_RS07740	0.24	-1.0
1,445,356	+		LU632_RS07740	0.75	+0.3
1,445,356	+		LU632_RS07740	0.75	+1.7