Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07695

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
1,438,265	-		LU632_RS07685	0.86	-0.0
1,438,348	-				+1.1
1,438,464	-		LU632_RS07690	0.16	-0.5
1,438,464	-		LU632_RS07690	0.16	-1.3
1,438,510	-		LU632_RS07690	0.21	+0.1
1,438,973	-		LU632_RS07690	0.73	+0.5
1,438,975	-		LU632_RS07690	0.73	-0.8
1,438,978	+		LU632_RS07690	0.73	-0.1
1,438,978	+		LU632_RS07690	0.73	-0.8
1,439,010	+		LU632_RS07690	0.77	-0.4
1,439,153	-				+0.1
1,439,200	-				+0.1
1,439,200	-				-0.5
1,439,251	-				-0.4
1,439,304	-				-0.2
1,439,304	-				-1.0
1,439,304	-				+0.4
1,439,330	-				-0.3
1,439,330	-				-1.4
1,439,330	-				+0.1
1,439,330	-				+0.2
1,439,380	+				-0.8
1,439,413	+		LU632_RS07695	0.11	+0.6
1,439,413	+		LU632_RS07695	0.11	-0.9
1,439,470	+		LU632_RS07695	0.14	-0.9
1,439,471	-		LU632_RS07695	0.14	-1.4
1,439,471	-		LU632_RS07695	0.14	-0.9
1,439,611	+		LU632_RS07695	0.22	+1.4
1,439,616	-		LU632_RS07695	0.22	+0.3
1,439,616	-		LU632_RS07695	0.22	+2.2
1,439,724	-		LU632_RS07695	0.28	+0.2
1,439,755	-		LU632_RS07695	0.30	-0.2
1,439,828	+		LU632_RS07695	0.34	-1.4
1,439,915	-		LU632_RS07695	0.39	+0.9
1,440,026	-		LU632_RS07695	0.45	-0.7
1,440,026	-		LU632_RS07695	0.45	+0.0
1,440,026	-		LU632_RS07695	0.45	+0.3
1,440,026	-		LU632_RS07695	0.45	+1.1
1,440,056	-		LU632_RS07695	0.47	+0.4
1,440,298	-		LU632_RS07695	0.61	+0.0
1,440,553	-		LU632_RS07695	0.75	+3.1
1,440,738	-		LU632_RS07695	0.86	-0.2
1,440,740	-		LU632_RS07695	0.86	-0.3
1,440,980	-				-0.2
1,441,182	-		LU632_RS07700	0.15	-0.1
1,441,205	-		LU632_RS07700	0.17	-0.4
1,441,294	+		LU632_RS07700	0.25	+0.2
1,441,543	-		LU632_RS07700	0.46	+0.1
1,441,614	-		LU632_RS07700	0.52	+1.2