Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07650

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
1,432,832	-		LU632_RS07640	0.29	-0.4
1,432,853	+		LU632_RS07640	0.32	-1.1
1,432,854	-		LU632_RS07640	0.32	+0.7
1,432,854	-		LU632_RS07640	0.32	-0.9
1,432,903	+		LU632_RS07640	0.39	+1.2
1,432,904	-		LU632_RS07640	0.39	-0.8
1,432,904	-		LU632_RS07640	0.39	+1.7
1,433,000	+		LU632_RS07640	0.52	-1.1
1,433,000	+		LU632_RS07640	0.52	-0.6
1,433,255	-		LU632_RS07640	0.87	+0.5
1,433,258	+		LU632_RS07640	0.88	+0.3
1,433,258	+		LU632_RS07640	0.88	-1.9
1,433,406	-		LU632_RS07645	0.17	-1.0
1,433,514	-		LU632_RS07645	0.47	+0.2
1,433,571	+		LU632_RS07645	0.64	-0.1
1,433,572	-		LU632_RS07645	0.64	+1.2
1,433,764	+				-0.7
1,433,765	-				+0.2
1,433,766	+				-0.7
1,433,766	+				+1.6
1,433,766	+				+0.2
1,433,767	-				+2.0
1,433,767	-				+0.2
1,433,904	+		LU632_RS07650	0.23	-1.1
1,434,074	+		LU632_RS07650	0.76	-0.9
1,434,082	+		LU632_RS07650	0.78	-1.4