Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07380 and LU632_RS07385 are separated by 282 nucleotides LU632_RS07385 and LU632_RS07390 are separated by 124 nucleotides LU632_RS07390 and LU632_RS07395 are separated by 39 nucleotides LU632_RS07395 and LU632_RS07400 are separated by 26 nucleotides
LU632_RS07380: LU632_RS07380 - DUF2913 family protein, at 1,392,734 to 1,393,072
_RS07380
LU632_RS07385: LU632_RS07385 - recombinase family protein, at 1,393,355 to 1,393,942
_RS07385
LU632_RS07390: LU632_RS07390 - Rpn family recombination-promoting nuclease/putative transposase, at 1,394,067 to 1,395,032
_RS07390
LU632_RS07395: LU632_RS07395 - DUF2913 family protein, at 1,395,072 to 1,395,653
_RS07395
LU632_RS07400: LU632_RS07400 - hypothetical protein, at 1,395,680 to 1,396,270
_RS07400
Position (kb) 1394
1395
1396 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1393.160 kb on + strand at 1393.488 kb on + strand, within LU632_RS07385 at 1393.488 kb on + strand, within LU632_RS07385 at 1393.489 kb on - strand, within LU632_RS07385 at 1393.861 kb on + strand, within LU632_RS07385 at 1394.048 kb on - strand at 1394.191 kb on + strand, within LU632_RS07390 at 1394.192 kb on - strand, within LU632_RS07390 at 1394.192 kb on - strand, within LU632_RS07390 at 1394.237 kb on + strand, within LU632_RS07390 at 1394.259 kb on + strand, within LU632_RS07390 at 1394.277 kb on + strand, within LU632_RS07390 at 1394.277 kb on + strand, within LU632_RS07390 at 1394.308 kb on - strand, within LU632_RS07390 at 1394.313 kb on + strand, within LU632_RS07390 at 1394.313 kb on + strand, within LU632_RS07390 at 1394.313 kb on + strand, within LU632_RS07390 at 1394.314 kb on - strand, within LU632_RS07390 at 1394.314 kb on - strand, within LU632_RS07390 at 1394.316 kb on - strand, within LU632_RS07390 at 1394.316 kb on - strand, within LU632_RS07390 at 1394.316 kb on - strand, within LU632_RS07390 at 1394.529 kb on + strand, within LU632_RS07390 at 1394.529 kb on + strand, within LU632_RS07390 at 1394.529 kb on + strand, within LU632_RS07390 at 1394.620 kb on + strand, within LU632_RS07390 at 1394.620 kb on + strand, within LU632_RS07390 at 1394.620 kb on + strand, within LU632_RS07390 at 1394.620 kb on + strand, within LU632_RS07390 at 1394.621 kb on - strand, within LU632_RS07390 at 1395.215 kb on + strand, within LU632_RS07395 at 1395.252 kb on - strand, within LU632_RS07395 at 1395.331 kb on + strand, within LU632_RS07395 at 1395.405 kb on - strand, within LU632_RS07395 at 1395.405 kb on - strand, within LU632_RS07395 at 1395.644 kb on + strand at 1395.644 kb on + strand at 1395.645 kb on - strand at 1395.694 kb on + strand at 1395.694 kb on + strand at 1395.725 kb on - strand at 1395.746 kb on + strand, within LU632_RS07400 at 1395.901 kb on + strand, within LU632_RS07400 at 1395.901 kb on + strand, within LU632_RS07400 at 1395.901 kb on + strand, within LU632_RS07400 at 1395.902 kb on - strand, within LU632_RS07400 at 1395.931 kb on + strand, within LU632_RS07400 at 1396.021 kb on - strand, within LU632_RS07400
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 1,393,160 + -0.1 1,393,488 + LU632_RS07385 0.23 +0.7 1,393,488 + LU632_RS07385 0.23 -0.2 1,393,489 - LU632_RS07385 0.23 -0.2 1,393,861 + LU632_RS07385 0.86 +0.0 1,394,048 - +0.4 1,394,191 + LU632_RS07390 0.13 +2.0 1,394,192 - LU632_RS07390 0.13 +1.0 1,394,192 - LU632_RS07390 0.13 +0.4 1,394,237 + LU632_RS07390 0.18 -0.9 1,394,259 + LU632_RS07390 0.20 -1.2 1,394,277 + LU632_RS07390 0.22 -1.4 1,394,277 + LU632_RS07390 0.22 +0.6 1,394,308 - LU632_RS07390 0.25 +3.3 1,394,313 + LU632_RS07390 0.25 +1.8 1,394,313 + LU632_RS07390 0.25 -0.2 1,394,313 + LU632_RS07390 0.25 -0.3 1,394,314 - LU632_RS07390 0.26 +0.1 1,394,314 - LU632_RS07390 0.26 +0.4 1,394,316 - LU632_RS07390 0.26 +1.9 1,394,316 - LU632_RS07390 0.26 -0.2 1,394,316 - LU632_RS07390 0.26 -0.2 1,394,529 + LU632_RS07390 0.48 -1.1 1,394,529 + LU632_RS07390 0.48 +0.4 1,394,529 + LU632_RS07390 0.48 +0.4 1,394,620 + LU632_RS07390 0.57 +1.1 1,394,620 + LU632_RS07390 0.57 -1.6 1,394,620 + LU632_RS07390 0.57 -0.4 1,394,620 + LU632_RS07390 0.57 -3.1 1,394,621 - LU632_RS07390 0.57 +0.0 1,395,215 + LU632_RS07395 0.25 -0.2 1,395,252 - LU632_RS07395 0.31 -0.7 1,395,331 + LU632_RS07395 0.45 +2.2 1,395,405 - LU632_RS07395 0.57 +0.1 1,395,405 - LU632_RS07395 0.57 -0.4 1,395,644 + +0.2 1,395,644 + +0.3 1,395,645 - -0.4 1,395,694 + +0.8 1,395,694 + +1.6 1,395,725 - -0.1 1,395,746 + LU632_RS07400 0.11 +0.1 1,395,901 + LU632_RS07400 0.37 +0.4 1,395,901 + LU632_RS07400 0.37 +0.1 1,395,901 + LU632_RS07400 0.37 -0.0 1,395,902 - LU632_RS07400 0.38 -0.1 1,395,931 + LU632_RS07400 0.42 -1.5 1,396,021 - LU632_RS07400 0.58 +0.5
Or see this region's nucleotide sequence