Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06695

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
1,286,075	+				-1.4
1,286,076	-				-0.3
1,286,079	+				-0.2
1,286,140	-				-0.5
1,286,308	+	cysT	LU632_RS06690	0.20	-1.7
1,286,308	+	cysT	LU632_RS06690	0.20	-0.2
1,286,309	-	cysT	LU632_RS06690	0.21	-0.5
1,286,525	-	cysT	LU632_RS06690	0.46	-1.5
1,286,559	+	cysT	LU632_RS06690	0.50	-0.2
1,286,733	-	cysT	LU632_RS06690	0.71	-0.2
1,286,832	+	cysT	LU632_RS06690	0.83	-1.1
1,286,953	+				+1.3
1,286,960	-				-1.4
1,286,965	+				+0.1
1,286,990	-				+0.4
1,287,035	-				+0.4
1,287,074	-	cysP	LU632_RS06695	0.10	+0.3
1,287,137	+	cysP	LU632_RS06695	0.16	+0.3
1,287,138	-	cysP	LU632_RS06695	0.16	+0.8
1,287,138	-	cysP	LU632_RS06695	0.16	+0.4
1,287,138	-	cysP	LU632_RS06695	0.16	-0.7
1,287,171	+	cysP	LU632_RS06695	0.20	-1.5
1,287,173	+	cysP	LU632_RS06695	0.20	-1.5
1,287,174	-	cysP	LU632_RS06695	0.20	-0.9
1,287,174	-	cysP	LU632_RS06695	0.20	-0.9
1,287,174	-	cysP	LU632_RS06695	0.20	-1.1
1,287,180	-	cysP	LU632_RS06695	0.21	+2.5
1,287,195	+	cysP	LU632_RS06695	0.22	-0.5
1,287,196	-	cysP	LU632_RS06695	0.22	+1.3
1,287,265	-	cysP	LU632_RS06695	0.29	+0.1
1,287,282	+	cysP	LU632_RS06695	0.31	+0.6
1,287,283	-	cysP	LU632_RS06695	0.31	-0.2
1,287,347	-	cysP	LU632_RS06695	0.37	-1.0
1,287,349	+	cysP	LU632_RS06695	0.37	-0.3
1,287,349	+	cysP	LU632_RS06695	0.37	+1.0
1,287,349	+	cysP	LU632_RS06695	0.37	+1.3
1,287,439	-	cysP	LU632_RS06695	0.46	-0.2
1,287,503	+	cysP	LU632_RS06695	0.52	-0.4
1,287,503	+	cysP	LU632_RS06695	0.52	+1.0
1,287,504	-	cysP	LU632_RS06695	0.52	+0.1
1,287,532	-	cysP	LU632_RS06695	0.55	+0.3
1,287,595	-	cysP	LU632_RS06695	0.61	-0.4
1,287,633	-	cysP	LU632_RS06695	0.65	+0.4
1,287,648	+	cysP	LU632_RS06695	0.67	-0.4
1,287,728	+	cysP	LU632_RS06695	0.74	-0.6
1,287,728	+	cysP	LU632_RS06695	0.74	-1.6
1,287,728	+	cysP	LU632_RS06695	0.74	+0.5
1,287,728	+	cysP	LU632_RS06695	0.74	+1.4
1,287,729	-	cysP	LU632_RS06695	0.75	-0.3
1,287,729	-	cysP	LU632_RS06695	0.75	+0.7
1,287,729	-	cysP	LU632_RS06695	0.75	-1.5
1,287,729	-	cysP	LU632_RS06695	0.75	+2.4
1,287,736	+	cysP	LU632_RS06695	0.75	-1.9
1,287,757	+	cysP	LU632_RS06695	0.77	+0.7
1,287,757	+	cysP	LU632_RS06695	0.77	-0.1
1,287,758	-	cysP	LU632_RS06695	0.77	+0.8
1,287,891	-				+1.0
1,288,038	+				-1.2
1,288,043	-				+0.6
1,288,044	+				-0.1
1,288,053	-				+0.7
1,288,071	+				-1.7
1,288,099	-				-2.5
1,288,108	+				-0.2
1,288,143	+				-1.4
1,288,143	+				+0.4
1,288,163	+				-1.6
1,288,163	+				+0.2
1,288,284	+		LU632_RS06700	0.16	+0.5
1,288,284	+		LU632_RS06700	0.16	-0.9
1,288,285	-		LU632_RS06700	0.16	-0.4
1,288,292	-		LU632_RS06700	0.17	-0.9
1,288,292	-		LU632_RS06700	0.17	-1.3
1,288,292	-		LU632_RS06700	0.17	+0.1
1,288,292	-		LU632_RS06700	0.17	-0.6
1,288,334	-		LU632_RS06700	0.24	+2.1
1,288,374	+		LU632_RS06700	0.30	+0.2
1,288,555	+		LU632_RS06700	0.60	+0.9
1,288,555	+		LU632_RS06700	0.60	-1.6
1,288,556	-		LU632_RS06700	0.60	-1.0
1,288,556	-		LU632_RS06700	0.60	-0.6
1,288,558	-		LU632_RS06700	0.60	+0.5
1,288,562	-		LU632_RS06700	0.61	-2.2
1,288,562	-		LU632_RS06700	0.61	-1.2
1,288,781	+				-2.4
1,288,782	-				-0.8
1,288,805	+				+0.8
1,288,806	-				-0.9
1,288,819	+				-1.4
1,288,822	+				+0.3
1,288,823	-				+0.0
1,288,832	+				+0.2
1,288,872	-				+0.9
1,288,950	+		LU632_RS06705	0.18	-2.6
1,288,951	-		LU632_RS06705	0.18	+0.8