Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06205

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
1,188,212	-				-0.7
1,188,252	-				+0.8
1,188,254	-				+0.6
1,188,254	-				-1.0
1,188,285	-		LU632_RS06200	0.14	-0.8
1,188,285	-		LU632_RS06200	0.14	-0.1
1,188,285	-		LU632_RS06200	0.14	+1.7
1,188,288	+		LU632_RS06200	0.15	+0.0
1,188,289	-		LU632_RS06200	0.15	-0.3
1,188,291	-		LU632_RS06200	0.16	+1.0
1,188,297	+		LU632_RS06200	0.17	-0.3
1,188,298	-		LU632_RS06200	0.17	-0.5
1,188,303	+		LU632_RS06200	0.18	+0.4
1,188,386	+		LU632_RS06200	0.37	-0.0
1,188,543	+		LU632_RS06200	0.73	-0.7
1,188,544	-		LU632_RS06200	0.73	+0.8
1,188,560	+		LU632_RS06200	0.77	-0.2
1,188,560	+		LU632_RS06200	0.77	+1.2
1,188,581	-		LU632_RS06200	0.82	-1.1
1,188,649	-				+0.1
1,188,649	-				-0.3
1,188,683	+				-1.9
1,188,921	+		LU632_RS06205	0.37	-0.0
1,188,921	+		LU632_RS06205	0.37	-0.9
1,188,922	-		LU632_RS06205	0.38	-1.7
1,189,029	-		LU632_RS06205	0.53	+0.8
1,189,115	+		LU632_RS06205	0.65	+0.3
1,189,116	-		LU632_RS06205	0.65	-0.5
1,189,142	+		LU632_RS06205	0.69	-0.5
1,189,180	+		LU632_RS06205	0.74	-0.9
1,189,181	-		LU632_RS06205	0.74	+1.5
1,189,185	+		LU632_RS06205	0.75	-1.2
1,189,185	+		LU632_RS06205	0.75	-0.9
1,189,186	-		LU632_RS06205	0.75	-0.7
1,189,186	-		LU632_RS06205	0.75	+0.4
1,189,186	-		LU632_RS06205	0.75	-0.7
1,189,288	-		LU632_RS06205	0.90	+1.9
1,189,479	-				+0.4
1,189,507	+				+0.1
1,189,507	+				-0.4
1,189,508	-				-0.8
1,189,510	+				-0.5
1,189,581	+				-3.5
1,189,588	-				-0.7
1,189,611	-				-1.0
1,189,633	+				-1.5
1,189,855	+	argA	LU632_RS06210	0.24	-1.9
1,189,858	+	argA	LU632_RS06210	0.25	-1.5
1,189,859	-	argA	LU632_RS06210	0.25	-1.7
1,189,859	-	argA	LU632_RS06210	0.25	+1.5
1,189,861	+	argA	LU632_RS06210	0.25	-2.0
1,190,068	+	argA	LU632_RS06210	0.40	-1.5
1,190,145	+	argA	LU632_RS06210	0.46	-0.7
1,190,145	+	argA	LU632_RS06210	0.46	-2.0
1,190,171	+	argA	LU632_RS06210	0.48	-1.5
1,190,172	-	argA	LU632_RS06210	0.48	-0.7
1,190,199	-	argA	LU632_RS06210	0.50	-0.5
1,190,199	-	argA	LU632_RS06210	0.50	-1.9
1,190,256	-	argA	LU632_RS06210	0.54	-0.4