Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt xerD and dsbC are separated by 43 nucleotides dsbC and recJ are separated by 5 nucleotides recJ and prfB are separated by 471 nucleotides
LU632_RS05975: xerD - site-specific tyrosine recombinase XerD, at 1,131,587 to 1,132,480
xerD
LU632_RS05980: dsbC - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 1,132,524 to 1,133,228
dsbC
LU632_RS05985: recJ - single-stranded-DNA-specific exonuclease RecJ, at 1,133,234 to 1,134,952
recJ
LU632_RS05990: prfB - peptide chain release factor 2, at 1,135,424 to 1,136,522
prfB
Position (kb) 1133
1134
1135 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1132.452 kb on + strand at 1132.452 kb on + strand at 1132.490 kb on - strand at 1132.642 kb on + strand, within dsbC at 1132.642 kb on + strand, within dsbC at 1132.642 kb on + strand, within dsbC at 1132.643 kb on - strand, within dsbC at 1132.643 kb on - strand, within dsbC at 1132.643 kb on - strand, within dsbC at 1132.643 kb on - strand, within dsbC at 1132.698 kb on + strand, within dsbC at 1132.698 kb on + strand, within dsbC at 1132.699 kb on - strand, within dsbC at 1132.724 kb on + strand, within dsbC at 1132.748 kb on - strand, within dsbC at 1132.864 kb on + strand, within dsbC at 1132.864 kb on + strand, within dsbC at 1132.868 kb on + strand, within dsbC at 1132.869 kb on - strand, within dsbC at 1132.920 kb on + strand, within dsbC at 1132.921 kb on - strand, within dsbC at 1132.921 kb on - strand, within dsbC at 1132.938 kb on - strand, within dsbC at 1133.003 kb on + strand, within dsbC at 1133.004 kb on - strand, within dsbC at 1133.133 kb on - strand, within dsbC at 1133.164 kb on + strand at 1133.222 kb on + strand at 1133.452 kb on + strand, within recJ at 1133.453 kb on - strand, within recJ at 1133.453 kb on - strand, within recJ at 1133.455 kb on + strand, within recJ at 1133.456 kb on - strand, within recJ at 1133.456 kb on - strand, within recJ at 1133.456 kb on - strand, within recJ at 1133.525 kb on - strand, within recJ at 1133.546 kb on + strand, within recJ at 1133.547 kb on - strand, within recJ at 1133.629 kb on - strand, within recJ at 1134.116 kb on - strand, within recJ at 1134.116 kb on - strand, within recJ at 1134.166 kb on + strand, within recJ at 1134.166 kb on + strand, within recJ at 1134.167 kb on - strand, within recJ at 1134.299 kb on + strand, within recJ at 1134.300 kb on + strand, within recJ at 1134.300 kb on - strand, within recJ at 1134.490 kb on + strand, within recJ at 1134.490 kb on + strand, within recJ at 1134.508 kb on + strand, within recJ at 1134.669 kb on + strand, within recJ at 1134.670 kb on - strand, within recJ at 1134.724 kb on + strand, within recJ at 1134.736 kb on + strand, within recJ at 1134.736 kb on + strand, within recJ at 1134.823 kb on + strand at 1134.924 kb on + strand at 1134.981 kb on - strand at 1135.046 kb on - strand at 1135.061 kb on - strand at 1135.079 kb on - strand at 1135.175 kb on - strand at 1135.243 kb on + strand at 1135.243 kb on + strand at 1135.261 kb on - strand at 1135.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 1,132,452 + -0.6 1,132,452 + +0.4 1,132,490 - +0.7 1,132,642 + dsbC LU632_RS05980 0.17 -0.4 1,132,642 + dsbC LU632_RS05980 0.17 -0.3 1,132,642 + dsbC LU632_RS05980 0.17 -0.1 1,132,643 - dsbC LU632_RS05980 0.17 -0.6 1,132,643 - dsbC LU632_RS05980 0.17 -0.6 1,132,643 - dsbC LU632_RS05980 0.17 -1.1 1,132,643 - dsbC LU632_RS05980 0.17 -1.1 1,132,698 + dsbC LU632_RS05980 0.25 -1.8 1,132,698 + dsbC LU632_RS05980 0.25 +0.1 1,132,699 - dsbC LU632_RS05980 0.25 +0.4 1,132,724 + dsbC LU632_RS05980 0.28 +0.4 1,132,748 - dsbC LU632_RS05980 0.32 -0.1 1,132,864 + dsbC LU632_RS05980 0.48 -0.5 1,132,864 + dsbC LU632_RS05980 0.48 -0.5 1,132,868 + dsbC LU632_RS05980 0.49 -0.2 1,132,869 - dsbC LU632_RS05980 0.49 -0.4 1,132,920 + dsbC LU632_RS05980 0.56 +0.2 1,132,921 - dsbC LU632_RS05980 0.56 +0.8 1,132,921 - dsbC LU632_RS05980 0.56 -0.6 1,132,938 - dsbC LU632_RS05980 0.59 -0.6 1,133,003 + dsbC LU632_RS05980 0.68 -0.3 1,133,004 - dsbC LU632_RS05980 0.68 +0.6 1,133,133 - dsbC LU632_RS05980 0.86 -1.3 1,133,164 + -0.5 1,133,222 + -0.4 1,133,452 + recJ LU632_RS05985 0.13 +2.4 1,133,453 - recJ LU632_RS05985 0.13 +1.0 1,133,453 - recJ LU632_RS05985 0.13 +0.4 1,133,455 + recJ LU632_RS05985 0.13 +0.4 1,133,456 - recJ LU632_RS05985 0.13 -1.6 1,133,456 - recJ LU632_RS05985 0.13 -2.3 1,133,456 - recJ LU632_RS05985 0.13 -1.1 1,133,525 - recJ LU632_RS05985 0.17 +1.4 1,133,546 + recJ LU632_RS05985 0.18 +1.4 1,133,547 - recJ LU632_RS05985 0.18 -2.6 1,133,629 - recJ LU632_RS05985 0.23 +2.0 1,134,116 - recJ LU632_RS05985 0.51 +0.4 1,134,116 - recJ LU632_RS05985 0.51 -0.1 1,134,166 + recJ LU632_RS05985 0.54 -1.6 1,134,166 + recJ LU632_RS05985 0.54 -0.7 1,134,167 - recJ LU632_RS05985 0.54 -0.1 1,134,299 + recJ LU632_RS05985 0.62 -2.1 1,134,300 + recJ LU632_RS05985 0.62 -0.9 1,134,300 - recJ LU632_RS05985 0.62 -1.1 1,134,490 + recJ LU632_RS05985 0.73 -0.6 1,134,490 + recJ LU632_RS05985 0.73 +0.4 1,134,508 + recJ LU632_RS05985 0.74 -1.7 1,134,669 + recJ LU632_RS05985 0.83 -0.9 1,134,670 - recJ LU632_RS05985 0.84 -0.6 1,134,724 + recJ LU632_RS05985 0.87 +0.4 1,134,736 + recJ LU632_RS05985 0.87 -0.1 1,134,736 + recJ LU632_RS05985 0.87 -0.1 1,134,823 + -0.6 1,134,924 + +1.3 1,134,981 - +4.7 1,135,046 - -0.7 1,135,061 - -0.1 1,135,079 - +0.2 1,135,175 - -0.4 1,135,243 + -2.1 1,135,243 + +0.4 1,135,261 - -0.9 1,135,360 + +0.6
Or see this region's nucleotide sequence