Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05935

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
1,126,227	-		LU632_RS05930	0.45	-0.7
1,126,394	+		LU632_RS05930	0.56	-0.1
1,126,395	-		LU632_RS05930	0.56	-0.4
1,126,395	-		LU632_RS05930	0.56	-0.2
1,126,395	-		LU632_RS05930	0.56	-2.1
1,126,395	-		LU632_RS05930	0.56	-1.1
1,126,463	+		LU632_RS05930	0.61	-1.6
1,126,473	+		LU632_RS05930	0.62	-0.4
1,126,508	+		LU632_RS05930	0.64	+0.3
1,126,509	-		LU632_RS05930	0.64	-0.9
1,126,509	-		LU632_RS05930	0.64	+0.5
1,126,525	-		LU632_RS05930	0.65	-0.1
1,126,527	-		LU632_RS05930	0.65	+1.2
1,126,638	+		LU632_RS05930	0.73	+1.4
1,126,638	+		LU632_RS05930	0.73	+5.8
1,126,654	-		LU632_RS05930	0.74	-1.9
1,126,658	+		LU632_RS05930	0.74	+2.6
1,126,658	+		LU632_RS05930	0.74	-0.1
1,126,658	+		LU632_RS05930	0.74	-0.5
1,126,659	-		LU632_RS05930	0.75	-0.0
1,126,663	-		LU632_RS05930	0.75	-1.7
1,126,740	+		LU632_RS05930	0.80	+0.7
1,126,741	-		LU632_RS05930	0.80	-0.7
1,126,773	+		LU632_RS05930	0.82	+2.7
1,126,809	+		LU632_RS05930	0.85	+0.4
1,126,821	-		LU632_RS05930	0.86	+0.1
1,126,880	-		LU632_RS05930	0.90	+0.7
1,126,927	-				-0.2
1,126,927	-				-1.7
1,127,015	+				-0.8
1,127,016	-				+1.9
1,127,040	-				+0.2
1,127,043	+				+4.7
1,127,050	+				+1.3
1,127,058	-				+1.4
1,127,180	+				-0.2
1,127,180	+				+0.6
1,127,231	-				+1.0
1,127,377	+		LU632_RS05935	0.34	-1.1
1,127,398	+		LU632_RS05935	0.38	-1.3
1,127,496	-		LU632_RS05935	0.59	-1.6
1,127,496	-		LU632_RS05935	0.59	+0.9
1,127,496	-		LU632_RS05935	0.59	-1.4
1,127,530	+		LU632_RS05935	0.66	-2.0
1,127,582	+		LU632_RS05935	0.77	-0.6
1,127,707	+				-0.8
1,127,708	-				-0.6
1,127,759	-		LU632_RS05940	0.14	+0.2
1,127,759	-		LU632_RS05940	0.14	-1.6
1,127,819	+		LU632_RS05940	0.29	-0.4
1,127,820	-		LU632_RS05940	0.30	-1.3
1,127,826	+		LU632_RS05940	0.31	+0.2
1,127,837	-		LU632_RS05940	0.34	+0.9
1,127,841	-		LU632_RS05940	0.35	-1.5
1,127,978	+		LU632_RS05940	0.70	-0.1
1,127,978	+		LU632_RS05940	0.70	+0.6
1,127,979	-		LU632_RS05940	0.70	-1.0
1,127,986	-		LU632_RS05940	0.72	+1.7
1,128,010	+		LU632_RS05940	0.78	+0.9
1,128,023	-		LU632_RS05940	0.82	+1.1
1,128,074	-				-2.8
1,128,077	+				+0.4
1,128,078	-				+2.2
1,128,119	-				-0.0