Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05230

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
1,010,365	+		LU632_RS05220	0.60	-0.9
1,010,366	-		LU632_RS05220	0.60	-0.7
1,010,474	-		LU632_RS05220	0.67	+2.1
1,010,474	-		LU632_RS05220	0.67	-0.3
1,010,735	-		LU632_RS05220	0.86	-0.9
1,010,735	-		LU632_RS05220	0.86	-0.8
1,010,752	+		LU632_RS05220	0.87	+0.2
1,010,753	-		LU632_RS05220	0.87	-2.1
1,010,753	-		LU632_RS05220	0.87	-0.7
1,010,893	+				+0.3
1,010,959	+				+0.1
1,010,960	-				+1.1
1,011,023	-		LU632_RS05225	0.21	-0.6
1,011,141	-		LU632_RS05225	0.56	-0.5
1,011,142	+		LU632_RS05225	0.56	+0.5
1,011,301	+				-0.3
1,011,301	+				+0.2
1,011,302	-				+0.9
1,011,302	-				-1.1
1,011,310	+				+1.3
1,011,340	-				+2.8
1,011,400	-				-0.4
1,011,453	+		LU632_RS05230	0.11	+0.0
1,011,494	-		LU632_RS05230	0.14	+0.9
1,011,693	+		LU632_RS05230	0.26	-0.4
1,011,693	+		LU632_RS05230	0.26	+0.2
1,011,693	+		LU632_RS05230	0.26	+0.5
1,011,694	-		LU632_RS05230	0.27	+1.5
1,011,762	-		LU632_RS05230	0.31	+0.2
1,011,853	+		LU632_RS05230	0.37	-0.8
1,011,853	+		LU632_RS05230	0.37	+0.6
1,011,950	-		LU632_RS05230	0.43	-0.1
1,012,050	+		LU632_RS05230	0.50	-0.2
1,012,051	-		LU632_RS05230	0.50	-0.7
1,012,051	-		LU632_RS05230	0.50	-0.8
1,012,238	+		LU632_RS05230	0.62	-1.5
1,012,238	+		LU632_RS05230	0.62	-0.3
1,012,238	+		LU632_RS05230	0.62	+1.5
1,012,238	+		LU632_RS05230	0.62	-0.1
1,012,238	+		LU632_RS05230	0.62	+0.6
1,012,238	+		LU632_RS05230	0.62	-2.5
1,012,239	-		LU632_RS05230	0.62	+0.2
1,012,239	-		LU632_RS05230	0.62	-1.1
1,012,239	-		LU632_RS05230	0.62	+0.7
1,012,239	-		LU632_RS05230	0.62	+0.5
1,012,239	-		LU632_RS05230	0.62	+1.7
1,012,241	-		LU632_RS05230	0.62	+1.1
1,012,353	+		LU632_RS05230	0.69	+0.9
1,012,353	+		LU632_RS05230	0.69	+0.3
1,012,354	-		LU632_RS05230	0.70	+0.3
1,012,354	-		LU632_RS05230	0.70	-0.6
1,012,354	-		LU632_RS05230	0.70	+0.1
1,012,402	+		LU632_RS05230	0.73	-0.5
1,012,438	+		LU632_RS05230	0.75	-1.2
1,012,447	-		LU632_RS05230	0.76	-0.8
1,012,549	+		LU632_RS05230	0.82	-0.9
1,012,625	+		LU632_RS05230	0.87	-1.2
1,012,626	-		LU632_RS05230	0.87	-0.3
1,012,626	-		LU632_RS05230	0.87	-2.0
1,012,689	+				-1.2
1,012,690	-				+0.0
1,012,690	-				-0.1
1,012,690	-				-0.4
1,012,737	-				+0.9
1,012,784	+				-1.0
1,012,819	+				+0.5
1,012,819	+				-0.0
1,012,827	+				+0.2
1,012,827	+				+1.6
1,012,827	+				-0.6
1,012,828	-				-0.2
1,012,831	+				+0.8
1,012,831	+				-0.7
1,012,832	-				-0.2
1,012,832	-				+1.4
1,012,832	-				-0.3
1,012,839	+				+1.0
1,012,840	-				-0.7
1,012,856	+				-1.5
1,012,877	+				-0.2
1,012,966	+		LU632_RS05235	0.38	+0.3
1,013,028	+		LU632_RS05235	0.59	+1.5
1,013,092	+		LU632_RS05235	0.81	+0.7
1,013,093	-		LU632_RS05235	0.82	-0.4
1,013,093	-		LU632_RS05235	0.82	-1.0
1,013,101	+		LU632_RS05235	0.85	+1.2
1,013,162	-				+0.3
1,013,447	+				+0.5
1,013,448	-				-1.3
1,013,452	-				-0.3
1,013,452	-				-0.2
1,013,452	-				-0.8
1,013,469	+				+0.1
1,013,620	+	umuD	LU632_RS05240	0.33	-0.7
1,013,620	+	umuD	LU632_RS05240	0.33	-0.8
1,013,621	-	umuD	LU632_RS05240	0.34	-0.2
1,013,621	-	umuD	LU632_RS05240	0.34	+1.0
1,013,621	-	umuD	LU632_RS05240	0.34	+0.5
1,013,673	+	umuD	LU632_RS05240	0.44	+0.4
1,013,677	+	umuD	LU632_RS05240	0.45	-3.0
1,013,678	-	umuD	LU632_RS05240	0.45	-0.3
1,013,678	-	umuD	LU632_RS05240	0.45	-0.1
1,013,805	+	umuD	LU632_RS05240	0.70	-0.5
1,013,806	-	umuD	LU632_RS05240	0.70	-1.3
1,013,806	-	umuD	LU632_RS05240	0.70	+0.3
1,013,812	-	umuD	LU632_RS05240	0.71	-0.7
1,013,812	-	umuD	LU632_RS05240	0.71	-0.8
1,013,812	-	umuD	LU632_RS05240	0.71	-0.4
1,013,812	-	umuD	LU632_RS05240	0.71	-0.6