Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05080 and LU632_RS05085 are separated by 103 nucleotides LU632_RS05085 and LU632_RS05090 are separated by 143 nucleotides LU632_RS05090 and LU632_RS05095 are separated by 2 nucleotides
LU632_RS05080: LU632_RS05080 - IS91 family transposase, at 989,249 to 990,280
_RS05080
LU632_RS05085: LU632_RS05085 - GNAT family N-acetyltransferase, at 990,384 to 990,761
_RS05085
LU632_RS05090: LU632_RS05090 - contact-dependent growth inhibition system immunity protein, at 990,905 to 991,225
_RS05090
LU632_RS05095: LU632_RS05095 - hypothetical protein, at 991,228 to 992,061
_RS05095
Position (kb) 990
991
992 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 990.441 kb on - strand, within LU632_RS05085 at 990.624 kb on - strand, within LU632_RS05085 at 990.625 kb on + strand, within LU632_RS05085 at 990.625 kb on + strand, within LU632_RS05085 at 990.625 kb on + strand, within LU632_RS05085 at 990.625 kb on + strand, within LU632_RS05085 at 990.625 kb on + strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.702 kb on - strand, within LU632_RS05085 at 990.738 kb on - strand at 990.738 kb on - strand at 990.744 kb on - strand at 990.747 kb on + strand at 990.748 kb on - strand at 990.748 kb on - strand at 990.748 kb on - strand at 990.748 kb on - strand at 990.749 kb on + strand at 990.755 kb on + strand at 990.916 kb on + strand at 990.917 kb on - strand at 990.922 kb on + strand at 991.011 kb on + strand, within LU632_RS05090 at 991.011 kb on + strand, within LU632_RS05090 at 991.011 kb on + strand, within LU632_RS05090 at 991.012 kb on - strand, within LU632_RS05090 at 991.014 kb on + strand, within LU632_RS05090 at 991.015 kb on - strand, within LU632_RS05090 at 991.025 kb on + strand, within LU632_RS05090 at 991.113 kb on + strand, within LU632_RS05090 at 991.113 kb on + strand, within LU632_RS05090 at 991.114 kb on - strand, within LU632_RS05090 at 991.117 kb on + strand, within LU632_RS05090 at 991.117 kb on + strand, within LU632_RS05090 at 991.117 kb on + strand, within LU632_RS05090 at 991.118 kb on - strand, within LU632_RS05090 at 991.118 kb on - strand, within LU632_RS05090 at 991.122 kb on - strand, within LU632_RS05090 at 991.122 kb on - strand, within LU632_RS05090 at 991.135 kb on + strand, within LU632_RS05090 at 991.225 kb on + strand at 991.225 kb on + strand at 991.229 kb on + strand at 991.229 kb on + strand at 991.230 kb on - strand at 991.255 kb on - strand at 991.255 kb on - strand at 991.257 kb on - strand at 991.257 kb on - strand at 991.257 kb on - strand at 991.307 kb on + strand at 991.407 kb on + strand, within LU632_RS05095 at 991.437 kb on + strand, within LU632_RS05095 at 991.437 kb on + strand, within LU632_RS05095 at 991.437 kb on + strand, within LU632_RS05095 at 991.437 kb on + strand, within LU632_RS05095 at 991.437 kb on + strand, within LU632_RS05095 at 991.438 kb on - strand, within LU632_RS05095 at 991.438 kb on - strand, within LU632_RS05095 at 991.438 kb on - strand, within LU632_RS05095 at 991.438 kb on - strand, within LU632_RS05095 at 991.439 kb on + strand, within LU632_RS05095 at 991.440 kb on - strand, within LU632_RS05095 at 991.440 kb on - strand, within LU632_RS05095 at 991.440 kb on - strand, within LU632_RS05095 at 991.650 kb on + strand, within LU632_RS05095 at 991.650 kb on + strand, within LU632_RS05095 at 991.767 kb on + strand, within LU632_RS05095 at 991.768 kb on - strand, within LU632_RS05095 at 991.770 kb on + strand, within LU632_RS05095 at 991.770 kb on + strand, within LU632_RS05095 at 991.770 kb on + strand, within LU632_RS05095 at 991.771 kb on - strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.772 kb on + strand, within LU632_RS05095 at 991.773 kb on - strand, within LU632_RS05095 at 991.773 kb on - strand, within LU632_RS05095 at 991.776 kb on + strand, within LU632_RS05095 at 991.776 kb on + strand, within LU632_RS05095 at 991.776 kb on + strand, within LU632_RS05095 at 991.776 kb on + strand, within LU632_RS05095 at 991.776 kb on + strand, within LU632_RS05095 at 991.777 kb on - strand, within LU632_RS05095 at 991.777 kb on - strand, within LU632_RS05095 at 991.788 kb on + strand, within LU632_RS05095 at 991.855 kb on + strand, within LU632_RS05095 at 991.856 kb on - strand, within LU632_RS05095 at 991.856 kb on - strand, within LU632_RS05095 at 991.869 kb on + strand, within LU632_RS05095 at 991.986 kb on + strand at 991.989 kb on + strand at 991.989 kb on + strand at 991.990 kb on - strand at 991.990 kb on - strand at 991.990 kb on - strand at 992.049 kb on + strand at 992.050 kb on - strand at 992.050 kb on - strand at 992.052 kb on + strand at 992.052 kb on + strand at 992.068 kb on + strand at 992.090 kb on + strand at 992.091 kb on - strand at 992.091 kb on - strand at 992.092 kb on + strand at 992.092 kb on + strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.093 kb on - strand at 992.146 kb on + strand at 992.180 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 990,441 - LU632_RS05085 0.15 +0.9 990,624 - LU632_RS05085 0.63 -0.4 990,625 + LU632_RS05085 0.64 -0.4 990,625 + LU632_RS05085 0.64 -1.9 990,625 + LU632_RS05085 0.64 +0.7 990,625 + LU632_RS05085 0.64 +0.1 990,625 + LU632_RS05085 0.64 -1.9 990,626 - LU632_RS05085 0.64 -0.2 990,626 - LU632_RS05085 0.64 +2.2 990,626 - LU632_RS05085 0.64 +0.3 990,626 - LU632_RS05085 0.64 -0.2 990,626 - LU632_RS05085 0.64 -1.6 990,626 - LU632_RS05085 0.64 -1.8 990,626 - LU632_RS05085 0.64 +0.1 990,626 - LU632_RS05085 0.64 -0.6 990,626 - LU632_RS05085 0.64 +1.8 990,702 - LU632_RS05085 0.84 +0.3 990,738 - -0.5 990,738 - -0.7 990,744 - +0.2 990,747 + +1.7 990,748 - +0.5 990,748 - -0.4 990,748 - -1.1 990,748 - +1.5 990,749 + +0.7 990,755 + -0.3 990,916 + +1.9 990,917 - -0.5 990,922 + -0.3 991,011 + LU632_RS05090 0.33 +1.3 991,011 + LU632_RS05090 0.33 -1.4 991,011 + LU632_RS05090 0.33 +0.4 991,012 - LU632_RS05090 0.33 -1.3 991,014 + LU632_RS05090 0.34 +0.4 991,015 - LU632_RS05090 0.34 +0.5 991,025 + LU632_RS05090 0.37 +1.0 991,113 + LU632_RS05090 0.65 -0.1 991,113 + LU632_RS05090 0.65 +0.6 991,114 - LU632_RS05090 0.65 +1.1 991,117 + LU632_RS05090 0.66 +1.0 991,117 + LU632_RS05090 0.66 +2.0 991,117 + LU632_RS05090 0.66 -0.4 991,118 - LU632_RS05090 0.66 -0.0 991,118 - LU632_RS05090 0.66 +0.5 991,122 - LU632_RS05090 0.68 -0.1 991,122 - LU632_RS05090 0.68 -0.5 991,135 + LU632_RS05090 0.72 +0.7 991,225 + +1.5 991,225 + -0.8 991,229 + +0.7 991,229 + -0.1 991,230 - +1.0 991,255 - +0.9 991,255 - +1.0 991,257 - -0.0 991,257 - +0.5 991,257 - -1.0 991,307 + -0.1 991,407 + LU632_RS05095 0.21 +0.0 991,437 + LU632_RS05095 0.25 -0.1 991,437 + LU632_RS05095 0.25 -1.1 991,437 + LU632_RS05095 0.25 +0.9 991,437 + LU632_RS05095 0.25 +1.0 991,437 + LU632_RS05095 0.25 +1.8 991,438 - LU632_RS05095 0.25 -0.7 991,438 - LU632_RS05095 0.25 +2.1 991,438 - LU632_RS05095 0.25 +1.1 991,438 - LU632_RS05095 0.25 -1.4 991,439 + LU632_RS05095 0.25 -1.4 991,440 - LU632_RS05095 0.25 +0.2 991,440 - LU632_RS05095 0.25 +0.0 991,440 - LU632_RS05095 0.25 -1.0 991,650 + LU632_RS05095 0.51 +0.9 991,650 + LU632_RS05095 0.51 -2.2 991,767 + LU632_RS05095 0.65 +0.6 991,768 - LU632_RS05095 0.65 +0.1 991,770 + LU632_RS05095 0.65 -1.7 991,770 + LU632_RS05095 0.65 -0.7 991,770 + LU632_RS05095 0.65 +0.3 991,771 - LU632_RS05095 0.65 -0.8 991,772 + LU632_RS05095 0.65 +0.5 991,772 + LU632_RS05095 0.65 +0.5 991,772 + LU632_RS05095 0.65 -0.1 991,772 + LU632_RS05095 0.65 -1.5 991,772 + LU632_RS05095 0.65 -0.1 991,772 + LU632_RS05095 0.65 +0.5 991,773 - LU632_RS05095 0.65 -0.5 991,773 - LU632_RS05095 0.65 -0.8 991,776 + LU632_RS05095 0.66 -1.0 991,776 + LU632_RS05095 0.66 -1.3 991,776 + LU632_RS05095 0.66 +2.1 991,776 + LU632_RS05095 0.66 +0.6 991,776 + LU632_RS05095 0.66 -0.0 991,777 - LU632_RS05095 0.66 -1.5 991,777 - LU632_RS05095 0.66 +0.0 991,788 + LU632_RS05095 0.67 +1.3 991,855 + LU632_RS05095 0.75 +1.0 991,856 - LU632_RS05095 0.75 -0.5 991,856 - LU632_RS05095 0.75 -0.2 991,869 + LU632_RS05095 0.77 +0.5 991,986 + +0.2 991,989 + -0.3 991,989 + -1.9 991,990 - -1.6 991,990 - -0.6 991,990 - -0.3 992,049 + +0.2 992,050 - +0.4 992,050 - -0.2 992,052 + +0.6 992,052 + +0.1 992,068 + +1.3 992,090 + -0.3 992,091 - -0.7 992,091 - +0.5 992,092 + -0.7 992,092 + +0.4 992,093 - +0.4 992,093 - +3.4 992,093 - -2.8 992,093 - -0.1 992,093 - -0.9 992,146 + +0.7 992,180 + +3.7
Or see this region's nucleotide sequence