Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05030 and LU632_RS05035 are separated by 509 nucleotides LU632_RS05035 and LU632_RS05040 overlap by 1 nucleotides LU632_RS05040 and LU632_RS05045 overlap by 4 nucleotides LU632_RS05045 and LU632_RS05050 are separated by 127 nucleotides
LU632_RS05030: LU632_RS05030 - TIGR03752 family integrating conjugative element protein, at 977,024 to 977,569
_RS05030
LU632_RS05035: LU632_RS05035 - TIGR03751 family conjugal transfer lipoprotein, at 978,079 to 978,417
_RS05035
LU632_RS05040: LU632_RS05040 - conjugative transfer ATPase, at 978,417 to 981,281
_RS05040
LU632_RS05045: LU632_RS05045 - acetyltransferase, at 981,278 to 981,660
_RS05045
LU632_RS05050: LU632_RS05050 - DNA-binding protein, at 981,788 to 985,585
_RS05050
Position (kb) 978
979
980
981
982 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 977.435 kb on + strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.436 kb on - strand, within LU632_RS05030 at 977.440 kb on - strand, within LU632_RS05030 at 977.440 kb on - strand, within LU632_RS05030 at 977.463 kb on + strand, within LU632_RS05030 at 977.463 kb on + strand, within LU632_RS05030 at 977.464 kb on - strand, within LU632_RS05030 at 977.464 kb on - strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.468 kb on - strand, within LU632_RS05030 at 977.468 kb on - strand, within LU632_RS05030 at 977.468 kb on - strand, within LU632_RS05030 at 977.500 kb on + strand, within LU632_RS05030 at 977.767 kb on + strand at 977.799 kb on + strand at 977.885 kb on - strand at 977.885 kb on - strand at 977.910 kb on + strand at 977.910 kb on + strand at 977.911 kb on - strand at 978.030 kb on + strand at 978.047 kb on + strand at 978.048 kb on - strand at 978.099 kb on + strand at 978.100 kb on - strand at 978.213 kb on + strand, within LU632_RS05035 at 978.301 kb on + strand, within LU632_RS05035 at 978.301 kb on + strand, within LU632_RS05035 at 978.302 kb on - strand, within LU632_RS05035 at 978.357 kb on - strand, within LU632_RS05035 at 978.357 kb on - strand, within LU632_RS05035 at 978.357 kb on - strand, within LU632_RS05035 at 978.357 kb on - strand, within LU632_RS05035 at 978.368 kb on - strand, within LU632_RS05035 at 978.383 kb on - strand, within LU632_RS05035 at 978.383 kb on - strand, within LU632_RS05035 at 978.565 kb on - strand at 978.591 kb on + strand at 978.648 kb on - strand at 978.826 kb on - strand, within LU632_RS05040 at 978.839 kb on - strand, within LU632_RS05040 at 978.878 kb on + strand, within LU632_RS05040 at 978.879 kb on - strand, within LU632_RS05040 at 979.005 kb on - strand, within LU632_RS05040 at 979.088 kb on - strand, within LU632_RS05040 at 979.119 kb on - strand, within LU632_RS05040 at 979.203 kb on + strand, within LU632_RS05040 at 979.203 kb on + strand, within LU632_RS05040 at 979.203 kb on + strand, within LU632_RS05040 at 979.204 kb on - strand, within LU632_RS05040 at 979.204 kb on - strand, within LU632_RS05040 at 979.204 kb on - strand, within LU632_RS05040 at 979.321 kb on + strand, within LU632_RS05040 at 979.321 kb on + strand, within LU632_RS05040 at 979.331 kb on - strand, within LU632_RS05040 at 979.334 kb on + strand, within LU632_RS05040 at 979.335 kb on - strand, within LU632_RS05040 at 979.335 kb on - strand, within LU632_RS05040 at 979.335 kb on - strand, within LU632_RS05040 at 979.335 kb on - strand, within LU632_RS05040 at 979.338 kb on - strand, within LU632_RS05040 at 979.338 kb on - strand, within LU632_RS05040 at 979.445 kb on + strand, within LU632_RS05040 at 979.445 kb on + strand, within LU632_RS05040 at 979.596 kb on + strand, within LU632_RS05040 at 979.613 kb on + strand, within LU632_RS05040 at 979.621 kb on - strand, within LU632_RS05040 at 979.658 kb on + strand, within LU632_RS05040 at 979.700 kb on - strand, within LU632_RS05040 at 979.816 kb on - strand, within LU632_RS05040 at 979.951 kb on - strand, within LU632_RS05040 at 979.951 kb on - strand, within LU632_RS05040 at 979.951 kb on - strand, within LU632_RS05040 at 979.951 kb on - strand, within LU632_RS05040 at 980.003 kb on + strand, within LU632_RS05040 at 980.023 kb on - strand, within LU632_RS05040 at 980.141 kb on - strand, within LU632_RS05040 at 980.141 kb on - strand, within LU632_RS05040 at 980.148 kb on - strand, within LU632_RS05040 at 980.388 kb on - strand, within LU632_RS05040 at 980.388 kb on - strand, within LU632_RS05040 at 980.427 kb on + strand, within LU632_RS05040 at 980.428 kb on - strand, within LU632_RS05040 at 980.475 kb on + strand, within LU632_RS05040 at 980.475 kb on + strand, within LU632_RS05040 at 980.475 kb on + strand, within LU632_RS05040 at 980.475 kb on + strand, within LU632_RS05040 at 980.476 kb on - strand, within LU632_RS05040 at 980.481 kb on - strand, within LU632_RS05040 at 980.520 kb on - strand, within LU632_RS05040 at 980.726 kb on + strand, within LU632_RS05040 at 980.732 kb on + strand, within LU632_RS05040 at 980.732 kb on + strand, within LU632_RS05040 at 980.751 kb on + strand, within LU632_RS05040 at 980.767 kb on + strand, within LU632_RS05040 at 980.767 kb on + strand, within LU632_RS05040 at 980.768 kb on - strand, within LU632_RS05040 at 980.768 kb on - strand, within LU632_RS05040 at 980.768 kb on - strand, within LU632_RS05040 at 980.792 kb on + strand, within LU632_RS05040 at 980.823 kb on + strand, within LU632_RS05040 at 980.823 kb on + strand, within LU632_RS05040 at 980.824 kb on - strand, within LU632_RS05040 at 980.824 kb on - strand, within LU632_RS05040 at 980.824 kb on - strand, within LU632_RS05040 at 980.825 kb on + strand, within LU632_RS05040 at 980.825 kb on + strand, within LU632_RS05040 at 981.051 kb on + strand at 981.051 kb on + strand at 981.052 kb on - strand at 981.052 kb on - strand at 981.053 kb on + strand at 981.054 kb on - strand at 981.054 kb on - strand at 981.080 kb on + strand at 981.081 kb on - strand at 981.118 kb on - strand at 981.183 kb on + strand at 981.183 kb on + strand at 981.184 kb on - strand at 981.184 kb on - strand at 981.189 kb on - strand at 981.525 kb on + strand, within LU632_RS05045 at 981.525 kb on + strand, within LU632_RS05045 at 981.525 kb on + strand, within LU632_RS05045 at 981.526 kb on - strand, within LU632_RS05045 at 981.574 kb on + strand, within LU632_RS05045 at 981.575 kb on - strand, within LU632_RS05045 at 981.592 kb on + strand, within LU632_RS05045 at 981.592 kb on + strand, within LU632_RS05045 at 981.592 kb on + strand, within LU632_RS05045 at 981.593 kb on - strand, within LU632_RS05045 at 981.593 kb on - strand, within LU632_RS05045 at 981.593 kb on - strand, within LU632_RS05045 at 981.594 kb on + strand, within LU632_RS05045 at 981.594 kb on + strand, within LU632_RS05045 at 981.595 kb on - strand, within LU632_RS05045 at 981.649 kb on - strand at 981.649 kb on - strand at 981.649 kb on - strand at 981.650 kb on + strand at 981.650 kb on + strand at 981.651 kb on - strand at 981.651 kb on - strand at 981.651 kb on - strand at 981.659 kb on - strand at 981.796 kb on - strand at 981.807 kb on + strand at 981.807 kb on + strand at 981.808 kb on - strand at 981.968 kb on - strand at 982.003 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 977,435 + LU632_RS05030 0.75 +1.4 977,435 + LU632_RS05030 0.75 -0.4 977,435 + LU632_RS05030 0.75 +0.8 977,435 + LU632_RS05030 0.75 +1.2 977,436 - LU632_RS05030 0.75 +0.5 977,440 - LU632_RS05030 0.76 +0.6 977,440 - LU632_RS05030 0.76 +1.7 977,463 + LU632_RS05030 0.80 +0.0 977,463 + LU632_RS05030 0.80 -0.2 977,464 - LU632_RS05030 0.81 -0.1 977,464 - LU632_RS05030 0.81 +0.5 977,467 + LU632_RS05030 0.81 +1.7 977,467 + LU632_RS05030 0.81 -1.1 977,467 + LU632_RS05030 0.81 -0.5 977,467 + LU632_RS05030 0.81 +0.5 977,468 - LU632_RS05030 0.81 -2.9 977,468 - LU632_RS05030 0.81 +0.3 977,468 - LU632_RS05030 0.81 +0.4 977,500 + LU632_RS05030 0.87 +1.1 977,767 + +0.4 977,799 + -1.3 977,885 - -0.5 977,885 - -0.0 977,910 + -1.6 977,910 + -0.1 977,911 - -0.1 978,030 + +0.1 978,047 + +1.5 978,048 - -1.7 978,099 + -0.5 978,100 - -2.3 978,213 + LU632_RS05035 0.40 -0.2 978,301 + LU632_RS05035 0.65 -2.6 978,301 + LU632_RS05035 0.65 -1.7 978,302 - LU632_RS05035 0.66 -0.2 978,357 - LU632_RS05035 0.82 -0.1 978,357 - LU632_RS05035 0.82 -0.1 978,357 - LU632_RS05035 0.82 -0.8 978,357 - LU632_RS05035 0.82 -1.3 978,368 - LU632_RS05035 0.85 -0.3 978,383 - LU632_RS05035 0.90 +0.3 978,383 - LU632_RS05035 0.90 -0.4 978,565 - +0.9 978,591 + -0.4 978,648 - +0.7 978,826 - LU632_RS05040 0.14 +0.8 978,839 - LU632_RS05040 0.15 +0.1 978,878 + LU632_RS05040 0.16 -0.2 978,879 - LU632_RS05040 0.16 -0.7 979,005 - LU632_RS05040 0.21 -0.3 979,088 - LU632_RS05040 0.23 +0.1 979,119 - LU632_RS05040 0.25 +0.8 979,203 + LU632_RS05040 0.27 -0.8 979,203 + LU632_RS05040 0.27 +0.8 979,203 + LU632_RS05040 0.27 -0.1 979,204 - LU632_RS05040 0.27 -1.2 979,204 - LU632_RS05040 0.27 +1.0 979,204 - LU632_RS05040 0.27 -1.9 979,321 + LU632_RS05040 0.32 +0.5 979,321 + LU632_RS05040 0.32 +0.1 979,331 - LU632_RS05040 0.32 -2.1 979,334 + LU632_RS05040 0.32 +0.2 979,335 - LU632_RS05040 0.32 +1.1 979,335 - LU632_RS05040 0.32 +0.8 979,335 - LU632_RS05040 0.32 +0.3 979,335 - LU632_RS05040 0.32 -0.9 979,338 - LU632_RS05040 0.32 -0.3 979,338 - LU632_RS05040 0.32 -0.8 979,445 + LU632_RS05040 0.36 +2.0 979,445 + LU632_RS05040 0.36 -0.1 979,596 + LU632_RS05040 0.41 -2.2 979,613 + LU632_RS05040 0.42 +1.5 979,621 - LU632_RS05040 0.42 +1.3 979,658 + LU632_RS05040 0.43 +3.3 979,700 - LU632_RS05040 0.45 +0.5 979,816 - LU632_RS05040 0.49 +0.4 979,951 - LU632_RS05040 0.54 -0.3 979,951 - LU632_RS05040 0.54 +0.2 979,951 - LU632_RS05040 0.54 -0.6 979,951 - LU632_RS05040 0.54 -0.6 980,003 + LU632_RS05040 0.55 -2.7 980,023 - LU632_RS05040 0.56 -2.3 980,141 - LU632_RS05040 0.60 +1.0 980,141 - LU632_RS05040 0.60 -0.7 980,148 - LU632_RS05040 0.60 +0.6 980,388 - LU632_RS05040 0.69 +1.3 980,388 - LU632_RS05040 0.69 -0.7 980,427 + LU632_RS05040 0.70 -0.0 980,428 - LU632_RS05040 0.70 +0.4 980,475 + LU632_RS05040 0.72 -0.9 980,475 + LU632_RS05040 0.72 +0.4 980,475 + LU632_RS05040 0.72 +1.1 980,475 + LU632_RS05040 0.72 -0.3 980,476 - LU632_RS05040 0.72 -0.0 980,481 - LU632_RS05040 0.72 +1.3 980,520 - LU632_RS05040 0.73 -0.9 980,726 + LU632_RS05040 0.81 +0.5 980,732 + LU632_RS05040 0.81 -1.7 980,732 + LU632_RS05040 0.81 +0.8 980,751 + LU632_RS05040 0.81 -1.3 980,767 + LU632_RS05040 0.82 -0.2 980,767 + LU632_RS05040 0.82 -1.3 980,768 - LU632_RS05040 0.82 -0.7 980,768 - LU632_RS05040 0.82 -0.0 980,768 - LU632_RS05040 0.82 -2.1 980,792 + LU632_RS05040 0.83 -0.1 980,823 + LU632_RS05040 0.84 +0.6 980,823 + LU632_RS05040 0.84 +2.3 980,824 - LU632_RS05040 0.84 -0.8 980,824 - LU632_RS05040 0.84 -0.5 980,824 - LU632_RS05040 0.84 +0.3 980,825 + LU632_RS05040 0.84 -0.0 980,825 + LU632_RS05040 0.84 -0.4 981,051 + +0.5 981,051 + +0.5 981,052 - -0.1 981,052 - +1.3 981,053 + -1.1 981,054 - -1.5 981,054 - -0.2 981,080 + +0.5 981,081 - +0.1 981,118 - +1.6 981,183 + +2.8 981,183 + -1.6 981,184 - +0.5 981,184 - +1.3 981,189 - +1.8 981,525 + LU632_RS05045 0.64 -2.3 981,525 + LU632_RS05045 0.64 -2.1 981,525 + LU632_RS05045 0.64 -0.1 981,526 - LU632_RS05045 0.65 -0.2 981,574 + LU632_RS05045 0.77 -0.5 981,575 - LU632_RS05045 0.78 -0.5 981,592 + LU632_RS05045 0.82 -0.4 981,592 + LU632_RS05045 0.82 +1.1 981,592 + LU632_RS05045 0.82 +1.7 981,593 - LU632_RS05045 0.82 -0.3 981,593 - LU632_RS05045 0.82 +0.2 981,593 - LU632_RS05045 0.82 +0.3 981,594 + LU632_RS05045 0.83 -0.1 981,594 + LU632_RS05045 0.83 -0.1 981,595 - LU632_RS05045 0.83 +0.4 981,649 - -0.0 981,649 - -0.7 981,649 - +0.1 981,650 + +1.8 981,650 + -0.2 981,651 - +0.3 981,651 - -0.5 981,651 - +1.9 981,659 - +1.0 981,796 - -0.1 981,807 + +1.2 981,807 + -0.2 981,808 - +1.5 981,968 - -0.8 982,003 + +0.9
Or see this region's nucleotide sequence