Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04535 and LU632_RS04540 are separated by 98 nucleotides LU632_RS04540 and LU632_RS04545 are separated by 238 nucleotides
LU632_RS04535: LU632_RS04535 - IS91 family transposase, at 889,196 to 890,419
_RS04535
LU632_RS04540: LU632_RS04540 - recombinase family protein, at 890,518 to 890,937
_RS04540
LU632_RS04545: LU632_RS04545 - hypothetical protein, at 891,176 to 892,093
_RS04545
Position (kb) 890
891 Strain fitness (log2 ratio) -2
-1
0
1 at 890.500 kb on + strand at 890.500 kb on + strand at 890.500 kb on + strand at 890.546 kb on + strand at 890.546 kb on + strand at 890.568 kb on - strand, within LU632_RS04540 at 890.634 kb on + strand, within LU632_RS04540 at 890.634 kb on + strand, within LU632_RS04540 at 890.635 kb on - strand, within LU632_RS04540 at 890.657 kb on + strand, within LU632_RS04540 at 890.669 kb on + strand, within LU632_RS04540 at 890.669 kb on + strand, within LU632_RS04540 at 890.682 kb on - strand, within LU632_RS04540 at 890.779 kb on - strand, within LU632_RS04540 at 890.880 kb on + strand, within LU632_RS04540 at 890.881 kb on - strand, within LU632_RS04540 at 891.019 kb on + strand at 891.019 kb on + strand at 891.023 kb on + strand at 891.060 kb on + strand at 891.735 kb on - strand, within LU632_RS04545 at 891.785 kb on - strand, within LU632_RS04545 at 891.788 kb on + strand, within LU632_RS04545 at 891.788 kb on + strand, within LU632_RS04545 at 891.789 kb on - strand, within LU632_RS04545 at 891.825 kb on + strand, within LU632_RS04545 at 891.920 kb on - strand, within LU632_RS04545 at 891.920 kb on - strand, within LU632_RS04545
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 890,500 + -0.7 890,500 + +0.0 890,500 + +0.8 890,546 + +0.3 890,546 + +1.5 890,568 - LU632_RS04540 0.12 -0.1 890,634 + LU632_RS04540 0.28 -1.1 890,634 + LU632_RS04540 0.28 -1.3 890,635 - LU632_RS04540 0.28 -0.3 890,657 + LU632_RS04540 0.33 +0.0 890,669 + LU632_RS04540 0.36 +0.0 890,669 + LU632_RS04540 0.36 -0.3 890,682 - LU632_RS04540 0.39 -0.3 890,779 - LU632_RS04540 0.62 +0.1 890,880 + LU632_RS04540 0.86 -1.6 890,881 - LU632_RS04540 0.86 +1.0 891,019 + -1.7 891,019 + +1.0 891,023 + -0.3 891,060 + -1.0 891,735 - LU632_RS04545 0.61 -1.7 891,785 - LU632_RS04545 0.66 -0.1 891,788 + LU632_RS04545 0.67 +0.8 891,788 + LU632_RS04545 0.67 +1.3 891,789 - LU632_RS04545 0.67 +1.5 891,825 + LU632_RS04545 0.71 +0.5 891,920 - LU632_RS04545 0.81 +1.0 891,920 - LU632_RS04545 0.81 -2.3
Or see this region's nucleotide sequence