Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04470 and LU632_RS04475 are separated by 147 nucleotides LU632_RS04475 and LU632_RS04480 are separated by 113 nucleotides LU632_RS04480 and LU632_RS04485 are separated by 101 nucleotides LU632_RS04485 and LU632_RS04490 overlap by 4 nucleotides
LU632_RS04470: LU632_RS04470 - alpha/beta hydrolase-fold protein, at 880,941 to 881,840
_RS04470
LU632_RS04475: LU632_RS04475 - hypothetical protein, at 881,988 to 882,233
_RS04475
LU632_RS04480: LU632_RS04480 - helix-turn-helix transcriptional regulator, at 882,347 to 882,751
_RS04480
LU632_RS04485: LU632_RS04485 - SDR family oxidoreductase, at 882,853 to 883,704
_RS04485
LU632_RS04490: LU632_RS04490 - hypothetical protein, at 883,701 to 884,051
_RS04490
Position (kb) 882
883 Strain fitness (log2 ratio) -1
0
1
2
3 at 881.350 kb on - strand, within LU632_RS04470 at 881.352 kb on - strand, within LU632_RS04470 at 881.357 kb on - strand, within LU632_RS04470 at 881.657 kb on + strand, within LU632_RS04470 at 881.711 kb on + strand, within LU632_RS04470 at 881.771 kb on + strand at 881.774 kb on - strand at 881.981 kb on + strand at 882.035 kb on + strand, within LU632_RS04475 at 882.285 kb on - strand at 882.497 kb on + strand, within LU632_RS04480 at 882.634 kb on + strand, within LU632_RS04480 at 882.634 kb on + strand, within LU632_RS04480 at 882.638 kb on + strand, within LU632_RS04480 at 882.639 kb on - strand, within LU632_RS04480 at 882.799 kb on - strand at 882.800 kb on + strand at 882.938 kb on + strand at 883.052 kb on + strand, within LU632_RS04485 at 883.056 kb on - strand, within LU632_RS04485 at 883.421 kb on - strand, within LU632_RS04485
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 881,350 - LU632_RS04470 0.45 +1.9 881,352 - LU632_RS04470 0.46 -0.4 881,357 - LU632_RS04470 0.46 -0.6 881,657 + LU632_RS04470 0.80 -0.2 881,711 + LU632_RS04470 0.86 -0.3 881,771 + +0.3 881,774 - -1.6 881,981 + +0.1 882,035 + LU632_RS04475 0.19 +3.0 882,285 - +1.7 882,497 + LU632_RS04480 0.37 +0.1 882,634 + LU632_RS04480 0.71 +0.7 882,634 + LU632_RS04480 0.71 -0.1 882,638 + LU632_RS04480 0.72 +0.2 882,639 - LU632_RS04480 0.72 +0.5 882,799 - -0.3 882,800 + +1.2 882,938 + -1.3 883,052 + LU632_RS04485 0.23 +0.4 883,056 - LU632_RS04485 0.24 +1.1 883,421 - LU632_RS04485 0.67 +1.4
Or see this region's nucleotide sequence