Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04400 and LU632_RS04405 are separated by 150 nucleotides LU632_RS04405 and LU632_RS04410 are separated by 44 nucleotides LU632_RS04410 and LU632_RS04415 are separated by 30 nucleotides
LU632_RS04400: LU632_RS04400 - recombinase family protein, at 868,763 to 869,344
_RS04400
LU632_RS04405: LU632_RS04405 - DUF4158 domain-containing protein, at 869,495 to 869,767
_RS04405
LU632_RS04410: LU632_RS04410 - Tn3 family transposase, at 869,812 to 872,322
_RS04410
LU632_RS04415: LU632_RS04415 - IS91 family transposase, at 872,353 to 873,576
_RS04415
Position (kb) 869
870
871
872
873 Strain fitness (log2 ratio) -2
-1
0
1
2 at 868.973 kb on - strand, within LU632_RS04400 at 868.973 kb on - strand, within LU632_RS04400 at 869.006 kb on + strand, within LU632_RS04400 at 869.007 kb on - strand, within LU632_RS04400 at 869.007 kb on - strand, within LU632_RS04400 at 869.046 kb on + strand, within LU632_RS04400 at 869.046 kb on + strand, within LU632_RS04400 at 869.159 kb on - strand, within LU632_RS04400 at 869.345 kb on - strand at 869.439 kb on + strand at 869.476 kb on + strand at 869.515 kb on + strand at 870.017 kb on - strand at 870.017 kb on - strand at 870.059 kb on - strand at 870.976 kb on - strand, within LU632_RS04410 at 871.030 kb on - strand, within LU632_RS04410 at 871.681 kb on - strand, within LU632_RS04410 at 871.910 kb on - strand, within LU632_RS04410
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 868,973 - LU632_RS04400 0.36 -0.0 868,973 - LU632_RS04400 0.36 -1.3 869,006 + LU632_RS04400 0.42 -0.4 869,007 - LU632_RS04400 0.42 +0.1 869,007 - LU632_RS04400 0.42 -0.5 869,046 + LU632_RS04400 0.49 -2.7 869,046 + LU632_RS04400 0.49 +0.3 869,159 - LU632_RS04400 0.68 +2.5 869,345 - -1.3 869,439 + -0.3 869,476 + -0.0 869,515 + -0.0 870,017 - +2.0 870,017 - +0.7 870,059 - -0.8 870,976 - LU632_RS04410 0.46 -0.2 871,030 - LU632_RS04410 0.49 -0.8 871,681 - LU632_RS04410 0.74 +1.0 871,910 - LU632_RS04410 0.84 -2.0
Or see this region's nucleotide sequence