Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04385

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
866,210	+		LU632_RS04380	0.71	-0.1
866,211	-		LU632_RS04380	0.71	-0.3
866,392	-				-0.5
866,425	+				-2.1
866,427	+				+2.4
866,473	-				-1.4
866,473	-				-1.1
866,478	-				+0.7
866,478	-				+0.9
866,480	-				+1.2
866,517	+				-0.7
866,517	+				-0.9
866,517	+				-0.7
866,519	+				-2.1
866,519	+				+0.1
866,519	+				+1.0
866,575	+				+0.1
866,576	-				-0.3
866,582	+				+0.5
866,582	+				+2.4
866,834	+				-1.6
866,935	+				+0.1
866,935	+				-0.3
866,960	+				-0.1
866,961	-				+1.5
866,961	-				+0.9
866,965	-				-0.8
866,970	+				-0.5
866,994	-				-1.7
867,046	-				+0.9
867,115	+				-0.4
867,115	+				-0.3
867,116	-				-0.8
867,154	-				-0.8
867,173	-				-0.7
867,202	+				+0.5
867,203	-				-1.1
867,203	-				-0.5
867,206	+				-0.3
867,207	-				+0.1
867,252	+		LU632_RS04385	0.18	-0.3
867,252	+		LU632_RS04385	0.18	+0.2
867,253	-		LU632_RS04385	0.18	+2.4
867,318	-		LU632_RS04385	0.32	-0.3
867,423	+		LU632_RS04385	0.56	+0.6
867,423	+		LU632_RS04385	0.56	-0.6
867,424	-		LU632_RS04385	0.56	+0.3
867,762	-		LU632_RS04390	0.25	-0.6
868,139	-		LU632_RS04390	0.86	-1.7
868,229	+				-1.3
868,391	-		LU632_RS04395	0.29	-0.3
868,391	-		LU632_RS04395	0.29	-1.0
868,501	+		LU632_RS04395	0.51	-1.5
868,554	+		LU632_RS04395	0.62	-1.3
868,554	+		LU632_RS04395	0.62	+0.1
868,555	-		LU632_RS04395	0.63	-1.0