Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04375

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
863,612	+				+0.2
863,612	+				+0.2
863,655	-				+0.2
863,655	-				+0.0
863,659	-				-0.7
863,659	-				+0.7
863,663	+				+0.6
863,663	+				+0.3
863,664	-				+0.4
863,683	-				-0.6
863,795	+				+0.6
863,806	+				-1.5
863,972	-				-0.8
864,042	-				-1.3
864,042	-				+1.0
864,042	-				-1.3
864,075	+				+3.0
864,075	+				+0.3
864,076	-				-0.3
864,102	-				-0.3
864,122	+				+1.7
864,122	+				+0.3
864,122	+				+0.7
864,123	-				-1.4
864,126	+				-0.8
864,126	+				+0.3
864,177	+				-0.4
864,229	-		LU632_RS04370	0.31	-0.5
864,252	+		LU632_RS04370	0.41	-0.2
864,272	+		LU632_RS04370	0.50	-0.7
864,342	-		LU632_RS04370	0.80	-0.3
864,342	-		LU632_RS04370	0.80	-0.3
864,415	-				+1.0
865,942	-		LU632_RS04380	0.23	-1.9
866,075	-		LU632_RS04380	0.47	-0.1
866,075	-		LU632_RS04380	0.47	-0.2
866,075	-		LU632_RS04380	0.47	-0.4
866,134	+		LU632_RS04380	0.57	-1.5
866,210	+		LU632_RS04380	0.71	-0.1
866,211	-		LU632_RS04380	0.71	-0.3
866,392	-				-0.5
866,425	+				-2.1
866,427	+				+2.4
866,473	-				-1.4
866,473	-				-1.1
866,478	-				+0.7
866,478	-				+0.9
866,480	-				+1.2
866,517	+				-0.7
866,517	+				-0.9
866,517	+				-0.7
866,519	+				-2.1
866,519	+				+0.1
866,519	+				+1.0
866,575	+				+0.1
866,576	-				-0.3
866,582	+				+0.5
866,582	+				+2.4