Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04315

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
857,360	+				-0.4
857,361	-				-1.0
857,361	-				+1.3
857,403	+				+1.5
857,404	-				-0.6
857,456	+				-1.7
857,467	+				-0.8
857,467	+				+0.5
857,468	-				-0.4
857,538	-				-0.1
857,538	-				+0.1
857,538	-				-0.1
857,584	+				-0.6
857,585	-				-1.1
857,585	-				-1.0
857,585	-				+0.3
857,674	+				-0.8
857,751	+				+0.0
857,751	+				+0.4
857,842	+		LU632_RS04315	0.41	+0.6
857,852	-		LU632_RS04315	0.46	+0.2
857,909	+		LU632_RS04315	0.72	-0.5
857,909	+		LU632_RS04315	0.72	-0.8
857,909	+		LU632_RS04315	0.72	-0.6
857,910	-		LU632_RS04315	0.72	+1.3
857,983	-				-2.7
858,021	-				+2.8
858,160	+				-1.0
858,161	-				-0.2
858,262	-				+0.5
858,342	+				+2.2
858,342	+				-1.7
858,343	-				+0.9
858,358	+				-0.2
858,359	-				-1.2
858,359	-				-2.4
858,393	+				+0.5
858,502	-				+0.5
858,679	+		LU632_RS04320	0.27	-0.1
858,679	+		LU632_RS04320	0.27	-1.5
858,800	-		LU632_RS04320	0.51	+1.4
858,876	+		LU632_RS04320	0.66	-0.7
858,877	-		LU632_RS04320	0.66	+1.5
858,877	-		LU632_RS04320	0.66	+0.1
858,966	-		LU632_RS04320	0.83	-0.7
858,966	-		LU632_RS04320	0.83	-0.0