Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04265 and ulaD overlap by 4 nucleotides ulaD and LU632_RS04275 are separated by 2 nucleotides LU632_RS04275 and araD overlap by 4 nucleotides
LU632_RS04265: LU632_RS04265 - carbohydrate kinase, at 848,197 to 849,681
_RS04265
LU632_RS04270: ulaD - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 849,678 to 850,340
ulaD
LU632_RS04275: LU632_RS04275 - L-ribulose-5-phosphate 3-epimerase, at 850,343 to 851,200
_RS04275
LU632_RS04280: araD - L-ribulose-5-phosphate 4-epimerase, at 851,197 to 851,895
araD
Position (kb) 849
850
851 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 848.678 kb on - strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.741 kb on + strand, within LU632_RS04265 at 848.741 kb on + strand, within LU632_RS04265 at 848.743 kb on + strand, within LU632_RS04265 at 848.749 kb on - strand, within LU632_RS04265 at 848.853 kb on + strand, within LU632_RS04265 at 848.853 kb on + strand, within LU632_RS04265 at 848.854 kb on - strand, within LU632_RS04265 at 849.076 kb on + strand, within LU632_RS04265 at 849.076 kb on + strand, within LU632_RS04265 at 849.076 kb on + strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.079 kb on - strand, within LU632_RS04265 at 849.079 kb on - strand, within LU632_RS04265 at 849.162 kb on - strand, within LU632_RS04265 at 849.224 kb on - strand, within LU632_RS04265 at 849.263 kb on - strand, within LU632_RS04265 at 849.263 kb on - strand, within LU632_RS04265 at 849.300 kb on - strand, within LU632_RS04265 at 849.307 kb on - strand, within LU632_RS04265 at 849.310 kb on + strand, within LU632_RS04265 at 849.311 kb on - strand, within LU632_RS04265 at 849.337 kb on - strand, within LU632_RS04265 at 849.337 kb on - strand, within LU632_RS04265 at 849.337 kb on - strand, within LU632_RS04265 at 849.379 kb on - strand, within LU632_RS04265 at 849.673 kb on - strand at 849.876 kb on - strand, within ulaD at 850.090 kb on - strand, within ulaD at 850.235 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.268 kb on + strand, within ulaD at 850.325 kb on + strand at 850.337 kb on - strand at 850.338 kb on + strand at 850.338 kb on + strand at 850.338 kb on + strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.365 kb on + strand at 850.365 kb on + strand at 850.366 kb on - strand at 850.366 kb on - strand at 850.368 kb on - strand at 850.368 kb on - strand at 850.368 kb on - strand at 850.455 kb on + strand, within LU632_RS04275 at 850.548 kb on + strand, within LU632_RS04275 at 850.592 kb on - strand, within LU632_RS04275 at 850.622 kb on + strand, within LU632_RS04275 at 850.701 kb on - strand, within LU632_RS04275 at 850.701 kb on - strand, within LU632_RS04275 at 850.703 kb on + strand, within LU632_RS04275 at 850.819 kb on + strand, within LU632_RS04275 at 850.834 kb on + strand, within LU632_RS04275 at 850.834 kb on + strand, within LU632_RS04275 at 850.881 kb on + strand, within LU632_RS04275 at 850.882 kb on - strand, within LU632_RS04275 at 850.882 kb on - strand, within LU632_RS04275 at 851.256 kb on + strand at 851.256 kb on + strand at 851.257 kb on - strand at 851.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 848,678 - LU632_RS04265 0.32 -0.3 848,724 + LU632_RS04265 0.35 -0.4 848,724 + LU632_RS04265 0.35 +0.9 848,724 + LU632_RS04265 0.35 -0.9 848,724 + LU632_RS04265 0.35 +0.5 848,741 + LU632_RS04265 0.37 -0.8 848,741 + LU632_RS04265 0.37 -1.3 848,743 + LU632_RS04265 0.37 -1.5 848,749 - LU632_RS04265 0.37 +1.0 848,853 + LU632_RS04265 0.44 -1.2 848,853 + LU632_RS04265 0.44 -0.8 848,854 - LU632_RS04265 0.44 +0.4 849,076 + LU632_RS04265 0.59 -0.0 849,076 + LU632_RS04265 0.59 +0.8 849,076 + LU632_RS04265 0.59 -1.7 849,077 - LU632_RS04265 0.59 +2.1 849,077 - LU632_RS04265 0.59 -0.1 849,077 - LU632_RS04265 0.59 -1.8 849,077 - LU632_RS04265 0.59 +0.1 849,079 - LU632_RS04265 0.59 -1.3 849,079 - LU632_RS04265 0.59 -0.8 849,162 - LU632_RS04265 0.65 +0.3 849,224 - LU632_RS04265 0.69 -0.6 849,263 - LU632_RS04265 0.72 +0.2 849,263 - LU632_RS04265 0.72 -0.1 849,300 - LU632_RS04265 0.74 -0.1 849,307 - LU632_RS04265 0.75 +0.6 849,310 + LU632_RS04265 0.75 -1.8 849,311 - LU632_RS04265 0.75 +0.2 849,337 - LU632_RS04265 0.77 -0.6 849,337 - LU632_RS04265 0.77 -0.9 849,337 - LU632_RS04265 0.77 -0.2 849,379 - LU632_RS04265 0.80 +1.5 849,673 - -0.5 849,876 - ulaD LU632_RS04270 0.30 -1.7 850,090 - ulaD LU632_RS04270 0.62 -0.8 850,235 - ulaD LU632_RS04270 0.84 -1.1 850,241 - ulaD LU632_RS04270 0.85 -1.7 850,241 - ulaD LU632_RS04270 0.85 -0.2 850,241 - ulaD LU632_RS04270 0.85 +0.3 850,268 + ulaD LU632_RS04270 0.89 -0.5 850,325 + +0.1 850,337 - -0.8 850,338 + +1.9 850,338 + -0.2 850,338 + +0.2 850,339 - -1.5 850,339 - +1.5 850,339 - -0.5 850,339 - -2.9 850,365 + +0.0 850,365 + -0.1 850,366 - +0.5 850,366 - -1.5 850,368 - +1.1 850,368 - -2.1 850,368 - -1.1 850,455 + LU632_RS04275 0.13 +0.9 850,548 + LU632_RS04275 0.24 +0.2 850,592 - LU632_RS04275 0.29 -0.9 850,622 + LU632_RS04275 0.33 +3.4 850,701 - LU632_RS04275 0.42 +1.4 850,701 - LU632_RS04275 0.42 -1.6 850,703 + LU632_RS04275 0.42 +0.7 850,819 + LU632_RS04275 0.55 +1.3 850,834 + LU632_RS04275 0.57 -0.5 850,834 + LU632_RS04275 0.57 -0.5 850,881 + LU632_RS04275 0.63 +0.5 850,882 - LU632_RS04275 0.63 -0.8 850,882 - LU632_RS04275 0.63 -0.7 851,256 + +0.1 851,256 + -0.6 851,257 - -0.8 851,257 - -0.9
Or see this region's nucleotide sequence