Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04160 and LU632_RS04165 are separated by 345 nucleotides LU632_RS04165 and LU632_RS04170 are separated by 498 nucleotides
LU632_RS04160: LU632_RS04160 - KdgM family transporter, at 825,772 to 826,515
_RS04160
LU632_RS04165: LU632_RS04165 - 2-isopropylmalate synthase, at 826,861 to 827,376
_RS04165
LU632_RS04170: LU632_RS04170 - ankyrin repeat domain-containing protein, at 827,875 to 828,414
_RS04170
Position (kb) 826
827
828 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 825.969 kb on + strand, within LU632_RS04160 at 826.011 kb on + strand, within LU632_RS04160 at 826.012 kb on - strand, within LU632_RS04160 at 826.023 kb on - strand, within LU632_RS04160 at 826.105 kb on - strand, within LU632_RS04160 at 826.147 kb on + strand, within LU632_RS04160 at 826.158 kb on + strand, within LU632_RS04160 at 826.365 kb on + strand, within LU632_RS04160 at 826.366 kb on - strand, within LU632_RS04160 at 826.370 kb on - strand, within LU632_RS04160 at 826.383 kb on - strand, within LU632_RS04160 at 826.427 kb on - strand, within LU632_RS04160 at 826.443 kb on + strand at 826.446 kb on + strand at 826.618 kb on + strand at 826.719 kb on - strand at 826.754 kb on + strand at 826.754 kb on + strand at 826.801 kb on + strand at 826.852 kb on + strand at 826.888 kb on - strand at 826.888 kb on - strand at 826.999 kb on - strand, within LU632_RS04165 at 827.054 kb on + strand, within LU632_RS04165 at 827.058 kb on + strand, within LU632_RS04165 at 827.097 kb on + strand, within LU632_RS04165 at 827.236 kb on + strand, within LU632_RS04165 at 827.236 kb on + strand, within LU632_RS04165 at 827.256 kb on + strand, within LU632_RS04165 at 827.256 kb on + strand, within LU632_RS04165 at 827.257 kb on - strand, within LU632_RS04165 at 827.335 kb on - strand at 827.336 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.339 kb on - strand at 827.404 kb on + strand at 827.426 kb on + strand at 827.426 kb on + strand at 827.431 kb on + strand at 827.432 kb on - strand at 827.466 kb on + strand at 827.503 kb on - strand at 827.541 kb on + strand at 827.556 kb on + strand at 827.557 kb on - strand at 827.557 kb on - strand at 827.557 kb on - strand at 827.558 kb on + strand at 827.559 kb on - strand at 827.574 kb on + strand at 827.575 kb on - strand at 827.610 kb on - strand at 827.610 kb on - strand at 827.637 kb on + strand at 827.638 kb on - strand at 827.698 kb on + strand at 827.699 kb on - strand at 827.709 kb on - strand at 827.709 kb on - strand at 827.826 kb on + strand at 827.827 kb on - strand at 827.827 kb on - strand at 827.829 kb on + strand at 827.829 kb on + strand at 827.829 kb on + strand at 827.830 kb on - strand at 827.830 kb on - strand at 827.834 kb on - strand at 827.834 kb on - strand at 827.845 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.848 kb on - strand at 827.916 kb on + strand at 827.916 kb on + strand at 827.916 kb on + strand at 827.917 kb on - strand at 827.917 kb on - strand at 827.920 kb on - strand at 827.920 kb on - strand at 828.002 kb on + strand, within LU632_RS04170 at 828.002 kb on + strand, within LU632_RS04170 at 828.002 kb on + strand, within LU632_RS04170 at 828.003 kb on - strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.246 kb on - strand, within LU632_RS04170 at 828.309 kb on - strand, within LU632_RS04170 at 828.309 kb on - strand, within LU632_RS04170 at 828.312 kb on + strand, within LU632_RS04170 at 828.313 kb on - strand, within LU632_RS04170
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 825,969 + LU632_RS04160 0.26 +1.3 826,011 + LU632_RS04160 0.32 -0.5 826,012 - LU632_RS04160 0.32 +0.0 826,023 - LU632_RS04160 0.34 +0.3 826,105 - LU632_RS04160 0.45 +0.7 826,147 + LU632_RS04160 0.50 -0.6 826,158 + LU632_RS04160 0.52 -0.1 826,365 + LU632_RS04160 0.80 +0.1 826,366 - LU632_RS04160 0.80 -0.0 826,370 - LU632_RS04160 0.80 -1.2 826,383 - LU632_RS04160 0.82 +1.4 826,427 - LU632_RS04160 0.88 -0.1 826,443 + +0.2 826,446 + -0.9 826,618 + -1.7 826,719 - -1.7 826,754 + -0.7 826,754 + -0.8 826,801 + -0.1 826,852 + -0.5 826,888 - -1.8 826,888 - +0.8 826,999 - LU632_RS04165 0.27 -0.0 827,054 + LU632_RS04165 0.37 +0.6 827,058 + LU632_RS04165 0.38 +1.5 827,097 + LU632_RS04165 0.46 -1.4 827,236 + LU632_RS04165 0.73 -0.6 827,236 + LU632_RS04165 0.73 -0.4 827,256 + LU632_RS04165 0.77 +1.5 827,256 + LU632_RS04165 0.77 -0.9 827,257 - LU632_RS04165 0.77 -0.1 827,335 - -0.1 827,336 + +1.4 827,338 + +0.0 827,338 + -0.7 827,338 + -0.1 827,338 + -1.1 827,339 - +0.1 827,404 + +0.6 827,426 + -1.5 827,426 + +0.1 827,431 + -0.3 827,432 - -0.5 827,466 + -0.2 827,503 - -0.1 827,541 + +0.6 827,556 + -1.3 827,557 - -1.1 827,557 - -0.6 827,557 - -0.2 827,558 + +0.4 827,559 - -3.4 827,574 + -0.1 827,575 - -0.4 827,610 - +0.9 827,610 - -2.0 827,637 + +2.3 827,638 - -0.4 827,698 + -1.1 827,699 - +0.7 827,709 - +1.0 827,709 - +1.8 827,826 + -0.3 827,827 - -1.3 827,827 - +0.3 827,829 + +0.5 827,829 + -0.3 827,829 + -0.1 827,830 - +1.2 827,830 - -0.0 827,834 - -0.3 827,834 - +0.5 827,845 + +0.7 827,847 + +0.1 827,847 + +1.9 827,847 + -0.7 827,847 + -1.1 827,848 - -2.9 827,916 + -0.5 827,916 + +1.1 827,916 + -0.5 827,917 - +1.2 827,917 - +0.9 827,920 - +0.2 827,920 - -1.3 828,002 + LU632_RS04170 0.24 +0.7 828,002 + LU632_RS04170 0.24 -0.6 828,002 + LU632_RS04170 0.24 +0.7 828,003 - LU632_RS04170 0.24 +1.5 828,245 + LU632_RS04170 0.69 -0.0 828,245 + LU632_RS04170 0.69 +1.9 828,245 + LU632_RS04170 0.69 -0.2 828,246 - LU632_RS04170 0.69 +0.0 828,309 - LU632_RS04170 0.80 +0.5 828,309 - LU632_RS04170 0.80 -0.3 828,312 + LU632_RS04170 0.81 +0.5 828,313 - LU632_RS04170 0.81 -0.2
Or see this region's nucleotide sequence