Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ampD and ampE are separated by 39 nucleotides ampE and LU632_RS03055 are separated by 54 nucleotides LU632_RS03055 and LU632_RS03060 are separated by 630 nucleotides
LU632_RS03045: ampD - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 622,147 to 622,697
ampD
LU632_RS03050: ampE - beta-lactamase regulator AmpE, at 622,737 to 623,545
ampE
LU632_RS03055: LU632_RS03055 - hypothetical protein, at 623,600 to 623,866
_RS03055
LU632_RS03060: LU632_RS03060 - IS1 family transposase, at 624,497 to 625,000
_RS03060
Position (kb) 623
624 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 622.613 kb on + strand, within ampD at 622.613 kb on + strand, within ampD at 622.616 kb on + strand, within ampD at 622.616 kb on + strand, within ampD at 622.617 kb on - strand, within ampD at 622.617 kb on - strand, within ampD at 622.617 kb on - strand, within ampD at 622.693 kb on + strand at 622.693 kb on + strand at 622.693 kb on + strand at 622.694 kb on - strand at 622.694 kb on - strand at 622.695 kb on + strand at 622.696 kb on - strand at 622.696 kb on - strand at 622.696 kb on - strand at 622.696 kb on - strand at 622.696 kb on - strand at 622.696 kb on - strand at 622.696 kb on - strand at 622.696 kb on - strand at 622.696 kb on - strand at 622.696 kb on - strand at 622.696 kb on - strand at 622.844 kb on + strand, within ampE at 622.953 kb on - strand, within ampE at 622.981 kb on - strand, within ampE at 622.989 kb on + strand, within ampE at 622.989 kb on + strand, within ampE at 622.989 kb on + strand, within ampE at 623.009 kb on + strand, within ampE at 623.009 kb on + strand, within ampE at 623.126 kb on + strand, within ampE at 623.126 kb on + strand, within ampE at 623.126 kb on + strand, within ampE at 623.139 kb on + strand, within ampE at 623.281 kb on + strand, within ampE at 623.282 kb on - strand, within ampE at 623.322 kb on - strand, within ampE at 623.403 kb on + strand, within ampE at 623.403 kb on + strand, within ampE at 623.404 kb on - strand, within ampE at 623.527 kb on - strand at 623.528 kb on + strand at 623.529 kb on - strand at 623.529 kb on - strand at 623.552 kb on - strand at 623.552 kb on - strand at 623.552 kb on - strand at 623.554 kb on + strand at 623.555 kb on - strand at 623.602 kb on - strand at 623.602 kb on - strand at 623.676 kb on + strand, within LU632_RS03055 at 623.676 kb on + strand, within LU632_RS03055 at 623.696 kb on + strand, within LU632_RS03055 at 623.697 kb on - strand, within LU632_RS03055 at 623.698 kb on + strand, within LU632_RS03055 at 623.720 kb on + strand, within LU632_RS03055 at 623.726 kb on - strand, within LU632_RS03055 at 623.773 kb on - strand, within LU632_RS03055 at 623.978 kb on - strand at 624.505 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 622,613 + ampD LU632_RS03045 0.85 -0.4 622,613 + ampD LU632_RS03045 0.85 -0.0 622,616 + ampD LU632_RS03045 0.85 +0.3 622,616 + ampD LU632_RS03045 0.85 +0.1 622,617 - ampD LU632_RS03045 0.85 +4.0 622,617 - ampD LU632_RS03045 0.85 +0.0 622,617 - ampD LU632_RS03045 0.85 -0.2 622,693 + -1.9 622,693 + +1.0 622,693 + +1.3 622,694 - -1.6 622,694 - +2.0 622,695 + +0.3 622,696 - -1.0 622,696 - -1.6 622,696 - -0.3 622,696 - -0.9 622,696 - -0.8 622,696 - -0.4 622,696 - +0.8 622,696 - -0.4 622,696 - -1.2 622,696 - -0.8 622,696 - -1.8 622,844 + ampE LU632_RS03050 0.13 -1.1 622,953 - ampE LU632_RS03050 0.27 -0.4 622,981 - ampE LU632_RS03050 0.30 +1.1 622,989 + ampE LU632_RS03050 0.31 -0.2 622,989 + ampE LU632_RS03050 0.31 -0.8 622,989 + ampE LU632_RS03050 0.31 -1.2 623,009 + ampE LU632_RS03050 0.34 +0.1 623,009 + ampE LU632_RS03050 0.34 -0.1 623,126 + ampE LU632_RS03050 0.48 +0.7 623,126 + ampE LU632_RS03050 0.48 -1.2 623,126 + ampE LU632_RS03050 0.48 +0.0 623,139 + ampE LU632_RS03050 0.50 +0.2 623,281 + ampE LU632_RS03050 0.67 -0.6 623,282 - ampE LU632_RS03050 0.67 +1.1 623,322 - ampE LU632_RS03050 0.72 +5.9 623,403 + ampE LU632_RS03050 0.82 +1.6 623,403 + ampE LU632_RS03050 0.82 +0.9 623,404 - ampE LU632_RS03050 0.82 +1.2 623,527 - +1.2 623,528 + +1.8 623,529 - +0.6 623,529 - -0.4 623,552 - +1.4 623,552 - -0.6 623,552 - -0.2 623,554 + +0.3 623,555 - +0.4 623,602 - -0.6 623,602 - +0.1 623,676 + LU632_RS03055 0.28 -0.6 623,676 + LU632_RS03055 0.28 -0.2 623,696 + LU632_RS03055 0.36 +0.8 623,697 - LU632_RS03055 0.36 +0.8 623,698 + LU632_RS03055 0.37 +0.6 623,720 + LU632_RS03055 0.45 +0.4 623,726 - LU632_RS03055 0.47 +0.2 623,773 - LU632_RS03055 0.65 +0.4 623,978 - +0.5 624,505 - +3.9
Or see this region's nucleotide sequence