Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02710

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
543,471	+				-0.5
543,471	+				+1.8
543,473	+				-0.3
543,473	+				-1.2
543,473	+				-1.2
543,501	+				-0.2
543,501	+				-1.3
543,503	+				+0.7
544,047	-				+0.6
544,047	-				-0.3
544,049	-				+0.8
544,054	-				-0.7
544,129	-				+1.3
544,145	-				+1.2
544,148	+				-0.1
544,149	-				+0.5
544,149	-				-2.4
544,191	-				+0.6
544,276	-	djlA	LU632_RS02710	0.16	-0.7
544,400	-	djlA	LU632_RS02710	0.31	-0.4
544,493	+	djlA	LU632_RS02710	0.43	+0.8
544,498	+	djlA	LU632_RS02710	0.43	+1.5
544,498	+	djlA	LU632_RS02710	0.43	+0.3
544,499	-	djlA	LU632_RS02710	0.43	+0.4
544,579	-	djlA	LU632_RS02710	0.53	+0.6
544,623	-	djlA	LU632_RS02710	0.58	-0.9
544,734	-	djlA	LU632_RS02710	0.72	-0.7
544,896	+				+1.7
544,897	-				+2.3
544,964	+				+1.2
544,965	-				-0.4
544,965	-				+0.2
544,965	-				-0.0
544,965	-				+0.4
544,966	+				+0.4
544,966	+				-0.7
544,966	+				-0.3
544,966	-				+1.2
544,966	-				+1.3
544,967	-				-0.5
544,967	-				-0.3
544,967	-				-0.4
544,967	-				-0.4
544,967	-				+0.3
544,967	-				-1.6
544,967	-				-0.5
545,005	+				+0.2
545,021	+				+0.0
545,022	-				+0.5
545,075	+				+0.3
545,075	+				-0.6
545,186	+				+1.1
545,186	+				+0.2
545,186	+				-0.2
545,187	-				+0.8
545,187	-				+0.4
545,187	-				+1.1
545,188	+				-0.1
545,188	+				+1.0
545,212	+				-0.5