Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ettA and LU632_RS02570 are separated by 691 nucleotides LU632_RS02570 and sltY are separated by 500 nucleotides
LU632_RS02565: ettA - energy-dependent translational throttle protein EttA, at 509,729 to 511,396
ettA
LU632_RS02570: LU632_RS02570 - cation-translocating P-type ATPase C-terminal domain-containing protein, at 512,088 to 512,538
_RS02570
LU632_RS02575: sltY - murein transglycosylase, at 513,039 to 514,964
sltY
Position (kb) 512
513 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 511.153 kb on + strand, within ettA at 511.153 kb on + strand, within ettA at 511.158 kb on - strand, within ettA at 511.158 kb on - strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.221 kb on - strand, within ettA at 511.221 kb on - strand, within ettA at 511.264 kb on + strand at 511.264 kb on + strand at 511.265 kb on - strand at 511.265 kb on - strand at 511.398 kb on + strand at 511.399 kb on - strand at 511.399 kb on - strand at 511.573 kb on - strand at 511.597 kb on - strand at 511.660 kb on - strand at 511.674 kb on + strand at 511.688 kb on - strand at 511.858 kb on + strand at 511.859 kb on - strand at 511.862 kb on + strand at 511.862 kb on + strand at 511.863 kb on - strand at 511.863 kb on - strand at 511.863 kb on - strand at 511.976 kb on - strand at 511.976 kb on - strand at 512.109 kb on - strand at 512.196 kb on + strand, within LU632_RS02570 at 512.209 kb on - strand, within LU632_RS02570 at 512.291 kb on + strand, within LU632_RS02570 at 512.291 kb on + strand, within LU632_RS02570 at 512.291 kb on + strand, within LU632_RS02570 at 512.344 kb on + strand, within LU632_RS02570 at 512.344 kb on + strand, within LU632_RS02570 at 512.345 kb on - strand, within LU632_RS02570 at 512.351 kb on + strand, within LU632_RS02570 at 512.351 kb on + strand, within LU632_RS02570 at 512.352 kb on - strand, within LU632_RS02570 at 512.412 kb on + strand, within LU632_RS02570 at 512.539 kb on - strand at 512.539 kb on - strand at 512.558 kb on - strand at 512.579 kb on + strand at 512.579 kb on + strand at 512.579 kb on + strand at 512.665 kb on + strand at 512.668 kb on + strand at 512.668 kb on + strand at 512.669 kb on - strand at 512.716 kb on + strand at 512.794 kb on + strand at 512.800 kb on + strand at 512.801 kb on - strand at 512.821 kb on - strand at 512.836 kb on - strand at 512.890 kb on + strand at 512.911 kb on - strand at 512.913 kb on + strand at 512.913 kb on + strand at 512.914 kb on - strand at 512.914 kb on - strand at 512.923 kb on + strand at 512.993 kb on + strand at 512.993 kb on + strand at 512.993 kb on + strand at 512.993 kb on + strand at 512.993 kb on + strand at 512.996 kb on + strand at 512.996 kb on + strand at 512.997 kb on - strand at 513.011 kb on + strand at 513.217 kb on + strand at 513.217 kb on + strand at 513.218 kb on - strand at 513.218 kb on - strand at 513.219 kb on + strand at 513.219 kb on + strand at 513.301 kb on - strand, within sltY at 513.319 kb on + strand, within sltY at 513.344 kb on + strand, within sltY at 513.405 kb on - strand, within sltY at 513.432 kb on + strand, within sltY at 513.432 kb on + strand, within sltY at 513.432 kb on + strand, within sltY at 513.510 kb on - strand, within sltY
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 511,153 + ettA LU632_RS02565 0.85 +0.6 511,153 + ettA LU632_RS02565 0.85 +0.1 511,158 - ettA LU632_RS02565 0.86 -1.0 511,158 - ettA LU632_RS02565 0.86 -0.2 511,220 + ettA LU632_RS02565 0.89 -0.3 511,220 + ettA LU632_RS02565 0.89 +1.9 511,220 + ettA LU632_RS02565 0.89 +0.6 511,220 + ettA LU632_RS02565 0.89 +0.6 511,220 + ettA LU632_RS02565 0.89 +1.3 511,220 + ettA LU632_RS02565 0.89 +1.1 511,220 + ettA LU632_RS02565 0.89 +0.6 511,220 + ettA LU632_RS02565 0.89 +3.5 511,221 - ettA LU632_RS02565 0.89 +0.6 511,221 - ettA LU632_RS02565 0.89 +1.0 511,264 + +0.4 511,264 + +1.6 511,265 - -0.3 511,265 - -1.7 511,398 + -0.5 511,399 - +1.0 511,399 - -0.6 511,573 - -0.4 511,597 - -2.0 511,660 - +0.9 511,674 + -0.2 511,688 - -0.4 511,858 + -1.5 511,859 - +0.6 511,862 + +0.9 511,862 + -0.8 511,863 - +0.7 511,863 - -0.4 511,863 - -0.1 511,976 - -1.4 511,976 - +0.2 512,109 - -0.1 512,196 + LU632_RS02570 0.24 +0.4 512,209 - LU632_RS02570 0.27 -2.0 512,291 + LU632_RS02570 0.45 -0.7 512,291 + LU632_RS02570 0.45 -0.9 512,291 + LU632_RS02570 0.45 +1.3 512,344 + LU632_RS02570 0.57 +0.0 512,344 + LU632_RS02570 0.57 -0.1 512,345 - LU632_RS02570 0.57 -0.4 512,351 + LU632_RS02570 0.58 +0.6 512,351 + LU632_RS02570 0.58 -1.6 512,352 - LU632_RS02570 0.59 -0.4 512,412 + LU632_RS02570 0.72 -0.1 512,539 - +5.0 512,539 - +1.7 512,558 - -0.2 512,579 + +0.5 512,579 + +0.5 512,579 + -0.9 512,665 + -1.0 512,668 + -1.6 512,668 + -0.2 512,669 - -2.1 512,716 + -0.5 512,794 + +0.0 512,800 + +0.7 512,801 - +2.1 512,821 - -1.2 512,836 - -0.0 512,890 + -1.6 512,911 - +0.6 512,913 + +0.4 512,913 + -1.0 512,914 - -2.6 512,914 - -0.1 512,923 + +0.5 512,993 + +0.0 512,993 + -3.4 512,993 + -1.0 512,993 + -1.4 512,993 + +0.0 512,996 + +1.6 512,996 + -1.1 512,997 - +0.2 513,011 + +0.3 513,217 + -1.6 513,217 + -0.2 513,218 - -1.1 513,218 - +0.6 513,219 + +0.5 513,219 + -0.1 513,301 - sltY LU632_RS02575 0.14 -0.4 513,319 + sltY LU632_RS02575 0.15 -0.2 513,344 + sltY LU632_RS02575 0.16 +1.6 513,405 - sltY LU632_RS02575 0.19 -0.4 513,432 + sltY LU632_RS02575 0.20 +0.3 513,432 + sltY LU632_RS02575 0.20 -0.5 513,432 + sltY LU632_RS02575 0.20 -0.9 513,510 - sltY LU632_RS02575 0.24 +0.0
Or see this region's nucleotide sequence