Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt deoB and deoD are separated by 39 nucleotides deoD and LU632_RS02535 are separated by 187 nucleotides
LU632_RS02525: deoB - phosphopentomutase, at 501,107 to 502,330
deoB
LU632_RS02530: deoD - purine-nucleoside phosphorylase, at 502,370 to 503,089
deoD
LU632_RS02535: LU632_RS02535 - IS1 family transposase, at 503,277 to 503,974
_RS02535
Position (kb) 502
503
504 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 501.397 kb on + strand, within deoB at 501.453 kb on - strand, within deoB at 501.586 kb on + strand, within deoB at 501.586 kb on + strand, within deoB at 501.586 kb on + strand, within deoB at 501.586 kb on + strand, within deoB at 501.587 kb on - strand, within deoB at 501.587 kb on - strand, within deoB at 501.612 kb on - strand, within deoB at 501.612 kb on - strand, within deoB at 501.677 kb on + strand, within deoB at 501.722 kb on + strand, within deoB at 501.722 kb on + strand, within deoB at 501.723 kb on - strand, within deoB at 501.724 kb on + strand, within deoB at 501.724 kb on + strand, within deoB at 501.724 kb on + strand, within deoB at 501.725 kb on - strand, within deoB at 501.725 kb on - strand, within deoB at 501.826 kb on + strand, within deoB at 501.827 kb on - strand, within deoB at 501.897 kb on - strand, within deoB at 501.913 kb on + strand, within deoB at 501.914 kb on - strand, within deoB at 501.914 kb on - strand, within deoB at 501.914 kb on - strand, within deoB at 502.195 kb on + strand, within deoB at 502.196 kb on - strand, within deoB at 502.211 kb on + strand at 502.286 kb on + strand at 502.286 kb on + strand at 502.322 kb on - strand at 502.343 kb on - strand at 502.384 kb on + strand at 502.385 kb on - strand at 502.386 kb on + strand at 502.387 kb on - strand at 502.488 kb on + strand, within deoD at 502.526 kb on + strand, within deoD at 502.526 kb on + strand, within deoD at 502.526 kb on + strand, within deoD at 502.527 kb on - strand, within deoD at 502.527 kb on - strand, within deoD at 502.527 kb on - strand, within deoD at 502.528 kb on + strand, within deoD at 502.665 kb on + strand, within deoD at 502.665 kb on + strand, within deoD at 502.725 kb on + strand, within deoD at 502.774 kb on - strand, within deoD at 502.850 kb on + strand, within deoD at 502.850 kb on + strand, within deoD at 502.850 kb on + strand, within deoD at 502.851 kb on - strand, within deoD at 502.851 kb on - strand, within deoD at 502.851 kb on - strand, within deoD at 502.890 kb on - strand, within deoD at 502.972 kb on + strand, within deoD at 502.973 kb on - strand, within deoD at 503.146 kb on + strand at 503.150 kb on + strand at 503.150 kb on + strand at 503.151 kb on - strand at 503.151 kb on - strand at 503.151 kb on - strand at 503.151 kb on - strand at 503.151 kb on - strand at 503.212 kb on + strand at 504.003 kb on - strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.032 kb on + strand at 504.035 kb on - strand at 504.042 kb on + strand at 504.042 kb on + strand at 504.042 kb on + strand at 504.043 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 501,397 + deoB LU632_RS02525 0.24 -2.0 501,453 - deoB LU632_RS02525 0.28 +2.2 501,586 + deoB LU632_RS02525 0.39 +1.2 501,586 + deoB LU632_RS02525 0.39 +1.0 501,586 + deoB LU632_RS02525 0.39 -1.3 501,586 + deoB LU632_RS02525 0.39 +0.1 501,587 - deoB LU632_RS02525 0.39 +1.0 501,587 - deoB LU632_RS02525 0.39 -0.7 501,612 - deoB LU632_RS02525 0.41 -2.6 501,612 - deoB LU632_RS02525 0.41 +1.0 501,677 + deoB LU632_RS02525 0.47 +0.6 501,722 + deoB LU632_RS02525 0.50 -2.0 501,722 + deoB LU632_RS02525 0.50 +0.2 501,723 - deoB LU632_RS02525 0.50 +0.0 501,724 + deoB LU632_RS02525 0.50 +0.3 501,724 + deoB LU632_RS02525 0.50 -0.2 501,724 + deoB LU632_RS02525 0.50 +0.9 501,725 - deoB LU632_RS02525 0.50 +0.6 501,725 - deoB LU632_RS02525 0.50 -1.6 501,826 + deoB LU632_RS02525 0.59 -0.1 501,827 - deoB LU632_RS02525 0.59 -0.9 501,897 - deoB LU632_RS02525 0.65 -0.7 501,913 + deoB LU632_RS02525 0.66 -0.1 501,914 - deoB LU632_RS02525 0.66 +0.1 501,914 - deoB LU632_RS02525 0.66 +0.0 501,914 - deoB LU632_RS02525 0.66 +0.2 502,195 + deoB LU632_RS02525 0.89 +0.9 502,196 - deoB LU632_RS02525 0.89 +0.3 502,211 + +0.7 502,286 + +0.8 502,286 + +0.2 502,322 - +0.9 502,343 - -1.6 502,384 + +2.0 502,385 - +0.2 502,386 + -0.7 502,387 - +0.0 502,488 + deoD LU632_RS02530 0.16 -0.8 502,526 + deoD LU632_RS02530 0.22 +1.0 502,526 + deoD LU632_RS02530 0.22 -0.1 502,526 + deoD LU632_RS02530 0.22 +0.3 502,527 - deoD LU632_RS02530 0.22 -1.9 502,527 - deoD LU632_RS02530 0.22 -0.2 502,527 - deoD LU632_RS02530 0.22 -0.5 502,528 + deoD LU632_RS02530 0.22 +0.3 502,665 + deoD LU632_RS02530 0.41 -2.1 502,665 + deoD LU632_RS02530 0.41 -1.9 502,725 + deoD LU632_RS02530 0.49 -0.2 502,774 - deoD LU632_RS02530 0.56 -0.4 502,850 + deoD LU632_RS02530 0.67 -0.6 502,850 + deoD LU632_RS02530 0.67 -0.3 502,850 + deoD LU632_RS02530 0.67 +0.6 502,851 - deoD LU632_RS02530 0.67 -1.6 502,851 - deoD LU632_RS02530 0.67 +0.0 502,851 - deoD LU632_RS02530 0.67 -0.6 502,890 - deoD LU632_RS02530 0.72 +1.1 502,972 + deoD LU632_RS02530 0.84 +2.0 502,973 - deoD LU632_RS02530 0.84 -0.4 503,146 + +0.1 503,150 + +0.3 503,150 + -1.4 503,151 - -1.6 503,151 - -0.4 503,151 - -1.1 503,151 - +0.3 503,151 - +0.5 503,212 + -1.2 504,003 - -0.4 504,030 + -0.9 504,030 + -0.7 504,030 + -1.3 504,030 + -0.2 504,030 + -0.6 504,030 + +0.6 504,030 + -0.5 504,030 + -0.4 504,031 - -1.5 504,031 - +0.1 504,031 - +0.1 504,031 - -0.7 504,031 - -3.1 504,031 - -1.0 504,031 - -0.7 504,031 - +0.3 504,031 - -0.7 504,032 + -0.6 504,035 - +0.6 504,042 + +1.5 504,042 + +0.6 504,042 + +0.2 504,043 - +2.3
Or see this region's nucleotide sequence