Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt deoC and LU632_RS02520 are separated by 15 nucleotides LU632_RS02520 and deoB are separated by 79 nucleotides
LU632_RS02515: deoC - deoxyribose-phosphate aldolase, at 499,390 to 500,169
deoC
LU632_RS02520: LU632_RS02520 - thymidine phosphorylase, at 500,185 to 501,027
_RS02520
LU632_RS02525: deoB - phosphopentomutase, at 501,107 to 502,330
deoB
Position (kb) 500
501
502 Strain fitness (log2 ratio) -2
-1
0
1
2 at 499.209 kb on + strand at 499.209 kb on + strand at 499.210 kb on - strand at 499.214 kb on + strand at 499.214 kb on + strand at 499.215 kb on - strand at 499.215 kb on - strand at 499.215 kb on - strand at 499.306 kb on + strand at 499.307 kb on - strand at 499.307 kb on - strand at 499.358 kb on + strand at 499.359 kb on - strand at 499.530 kb on + strand, within deoC at 499.530 kb on + strand, within deoC at 499.531 kb on - strand, within deoC at 499.531 kb on - strand, within deoC at 499.534 kb on + strand, within deoC at 499.884 kb on + strand, within deoC at 500.053 kb on - strand, within deoC at 500.331 kb on + strand, within LU632_RS02520 at 500.331 kb on + strand, within LU632_RS02520 at 500.331 kb on + strand, within LU632_RS02520 at 500.332 kb on - strand, within LU632_RS02520 at 500.332 kb on - strand, within LU632_RS02520 at 500.403 kb on + strand, within LU632_RS02520 at 500.425 kb on + strand, within LU632_RS02520 at 500.426 kb on - strand, within LU632_RS02520 at 500.426 kb on - strand, within LU632_RS02520 at 500.429 kb on - strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.495 kb on - strand, within LU632_RS02520 at 500.495 kb on - strand, within LU632_RS02520 at 500.495 kb on - strand, within LU632_RS02520 at 500.511 kb on + strand, within LU632_RS02520 at 500.857 kb on + strand, within LU632_RS02520 at 500.857 kb on + strand, within LU632_RS02520 at 500.858 kb on - strand, within LU632_RS02520 at 500.959 kb on + strand at 500.959 kb on + strand at 501.051 kb on + strand at 501.117 kb on + strand at 501.117 kb on + strand at 501.205 kb on + strand at 501.206 kb on - strand at 501.247 kb on + strand, within deoB at 501.247 kb on + strand, within deoB at 501.248 kb on - strand, within deoB at 501.248 kb on - strand, within deoB at 501.368 kb on + strand, within deoB at 501.397 kb on + strand, within deoB at 501.453 kb on - strand, within deoB at 501.586 kb on + strand, within deoB at 501.586 kb on + strand, within deoB at 501.586 kb on + strand, within deoB at 501.586 kb on + strand, within deoB at 501.587 kb on - strand, within deoB at 501.587 kb on - strand, within deoB at 501.612 kb on - strand, within deoB at 501.612 kb on - strand, within deoB at 501.677 kb on + strand, within deoB at 501.722 kb on + strand, within deoB at 501.722 kb on + strand, within deoB at 501.723 kb on - strand, within deoB at 501.724 kb on + strand, within deoB at 501.724 kb on + strand, within deoB at 501.724 kb on + strand, within deoB at 501.725 kb on - strand, within deoB at 501.725 kb on - strand, within deoB at 501.826 kb on + strand, within deoB at 501.827 kb on - strand, within deoB at 501.897 kb on - strand, within deoB at 501.913 kb on + strand, within deoB at 501.914 kb on - strand, within deoB at 501.914 kb on - strand, within deoB at 501.914 kb on - strand, within deoB
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 499,209 + -0.1 499,209 + -1.6 499,210 - +0.0 499,214 + +0.7 499,214 + +1.7 499,215 - -1.0 499,215 - -0.2 499,215 - -0.7 499,306 + +1.0 499,307 - +1.1 499,307 - -0.1 499,358 + +0.7 499,359 - +0.0 499,530 + deoC LU632_RS02515 0.18 +0.3 499,530 + deoC LU632_RS02515 0.18 -0.1 499,531 - deoC LU632_RS02515 0.18 +1.0 499,531 - deoC LU632_RS02515 0.18 +1.5 499,534 + deoC LU632_RS02515 0.18 -1.3 499,884 + deoC LU632_RS02515 0.63 -0.6 500,053 - deoC LU632_RS02515 0.85 -1.4 500,331 + LU632_RS02520 0.17 +0.7 500,331 + LU632_RS02520 0.17 +1.2 500,331 + LU632_RS02520 0.17 -0.7 500,332 - LU632_RS02520 0.17 +0.4 500,332 - LU632_RS02520 0.17 -0.3 500,403 + LU632_RS02520 0.26 +0.0 500,425 + LU632_RS02520 0.28 +1.1 500,426 - LU632_RS02520 0.29 -0.7 500,426 - LU632_RS02520 0.29 +0.3 500,429 - LU632_RS02520 0.29 +0.0 500,494 + LU632_RS02520 0.37 +0.6 500,494 + LU632_RS02520 0.37 +0.1 500,494 + LU632_RS02520 0.37 +1.0 500,494 + LU632_RS02520 0.37 +2.0 500,495 - LU632_RS02520 0.37 +0.0 500,495 - LU632_RS02520 0.37 +0.9 500,495 - LU632_RS02520 0.37 -0.2 500,511 + LU632_RS02520 0.39 +1.1 500,857 + LU632_RS02520 0.80 +0.1 500,857 + LU632_RS02520 0.80 +0.1 500,858 - LU632_RS02520 0.80 -2.3 500,959 + -0.1 500,959 + -1.1 501,051 + -0.7 501,117 + -0.6 501,117 + -1.7 501,205 + +0.8 501,206 - -1.3 501,247 + deoB LU632_RS02525 0.11 +0.1 501,247 + deoB LU632_RS02525 0.11 -0.1 501,248 - deoB LU632_RS02525 0.12 -0.9 501,248 - deoB LU632_RS02525 0.12 -1.5 501,368 + deoB LU632_RS02525 0.21 +0.1 501,397 + deoB LU632_RS02525 0.24 -2.0 501,453 - deoB LU632_RS02525 0.28 +2.2 501,586 + deoB LU632_RS02525 0.39 +1.2 501,586 + deoB LU632_RS02525 0.39 +1.0 501,586 + deoB LU632_RS02525 0.39 -1.3 501,586 + deoB LU632_RS02525 0.39 +0.1 501,587 - deoB LU632_RS02525 0.39 +1.0 501,587 - deoB LU632_RS02525 0.39 -0.7 501,612 - deoB LU632_RS02525 0.41 -2.6 501,612 - deoB LU632_RS02525 0.41 +1.0 501,677 + deoB LU632_RS02525 0.47 +0.6 501,722 + deoB LU632_RS02525 0.50 -2.1 501,722 + deoB LU632_RS02525 0.50 +0.2 501,723 - deoB LU632_RS02525 0.50 +0.0 501,724 + deoB LU632_RS02525 0.50 +0.3 501,724 + deoB LU632_RS02525 0.50 -0.2 501,724 + deoB LU632_RS02525 0.50 +0.9 501,725 - deoB LU632_RS02525 0.50 +0.6 501,725 - deoB LU632_RS02525 0.50 -1.6 501,826 + deoB LU632_RS02525 0.59 -0.1 501,827 - deoB LU632_RS02525 0.59 -0.9 501,897 - deoB LU632_RS02525 0.65 -0.7 501,913 + deoB LU632_RS02525 0.66 -0.1 501,914 - deoB LU632_RS02525 0.66 +0.1 501,914 - deoB LU632_RS02525 0.66 +0.0 501,914 - deoB LU632_RS02525 0.66 +0.2
Or see this region's nucleotide sequence