Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01990 and LU632_RS01995 are separated by 665 nucleotides LU632_RS01995 and LU632_RS02000 are separated by 224 nucleotides LU632_RS02000 and LU632_RS02005 are separated by 71 nucleotides LU632_RS02005 and LU632_RS02010 are separated by 3 nucleotides
LU632_RS01990: LU632_RS01990 - hemagglutinin repeat-containing protein, at 383,417 to 392,782
_RS01990
LU632_RS01995: LU632_RS01995 - type VI secretion system tube protein Hcp, at 393,448 to 393,843
_RS01995
LU632_RS02000: LU632_RS02000 - hypothetical protein, at 394,068 to 394,303
_RS02000
LU632_RS02005: LU632_RS02005 - integrase core domain-containing protein, at 394,375 to 394,591
_RS02005
LU632_RS02010: LU632_RS02010 - IS110 family transposase, at 394,595 to 395,503
_RS02010
Position (kb) 393
394 Strain fitness (log2 ratio) -2
-1
0
1
2 at 392.714 kb on - strand at 392.714 kb on - strand at 392.720 kb on + strand at 392.741 kb on - strand at 392.744 kb on - strand at 392.781 kb on + strand at 392.788 kb on - strand at 392.798 kb on + strand at 392.799 kb on - strand at 392.799 kb on - strand at 392.799 kb on - strand at 392.802 kb on + strand at 392.802 kb on + strand at 392.803 kb on - strand at 392.909 kb on + strand at 392.917 kb on - strand at 392.942 kb on + strand at 392.989 kb on + strand at 392.989 kb on + strand at 392.990 kb on - strand at 393.023 kb on + strand at 393.024 kb on - strand at 393.024 kb on - strand at 393.170 kb on + strand at 393.244 kb on - strand at 393.277 kb on + strand at 393.278 kb on - strand at 393.283 kb on + strand at 393.283 kb on + strand at 393.283 kb on + strand at 393.283 kb on + strand at 393.284 kb on - strand at 393.285 kb on + strand at 393.337 kb on - strand at 393.375 kb on - strand at 393.375 kb on - strand at 393.645 kb on - strand, within LU632_RS01995 at 393.702 kb on - strand, within LU632_RS01995 at 393.838 kb on - strand at 393.962 kb on + strand at 393.988 kb on + strand at 394.047 kb on - strand at 394.214 kb on + strand, within LU632_RS02000 at 394.335 kb on + strand at 394.373 kb on - strand at 394.373 kb on - strand at 394.375 kb on - strand at 394.375 kb on - strand at 394.377 kb on + strand at 394.377 kb on + strand at 394.436 kb on + strand, within LU632_RS02005 at 394.440 kb on + strand, within LU632_RS02005 at 394.440 kb on + strand, within LU632_RS02005 at 394.440 kb on + strand, within LU632_RS02005 at 394.475 kb on + strand, within LU632_RS02005 at 394.475 kb on + strand, within LU632_RS02005 at 394.475 kb on + strand, within LU632_RS02005 at 394.475 kb on + strand, within LU632_RS02005 at 394.476 kb on - strand, within LU632_RS02005 at 394.476 kb on - strand, within LU632_RS02005 at 394.477 kb on + strand, within LU632_RS02005 at 394.478 kb on - strand, within LU632_RS02005 at 394.490 kb on + strand, within LU632_RS02005 at 394.490 kb on + strand, within LU632_RS02005 at 394.514 kb on + strand, within LU632_RS02005 at 394.515 kb on - strand, within LU632_RS02005 at 394.517 kb on - strand, within LU632_RS02005 at 394.549 kb on + strand, within LU632_RS02005 at 394.597 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 392,714 - +0.6 392,714 - +0.4 392,720 + -1.2 392,741 - -1.2 392,744 - -1.0 392,781 + +0.0 392,788 - +0.1 392,798 + -1.2 392,799 - -0.7 392,799 - -1.3 392,799 - -0.7 392,802 + -0.4 392,802 + -0.3 392,803 - -1.1 392,909 + +2.2 392,917 - -0.6 392,942 + +0.6 392,989 + +0.6 392,989 + +0.6 392,990 - -0.7 393,023 + -1.8 393,024 - -0.5 393,024 - +0.9 393,170 + +1.9 393,244 - -0.9 393,277 + +1.1 393,278 - -1.6 393,283 + +0.4 393,283 + -0.1 393,283 + -0.5 393,283 + +0.4 393,284 - +1.2 393,285 + -0.4 393,337 - +0.6 393,375 - -1.4 393,375 - +2.0 393,645 - LU632_RS01995 0.50 -1.2 393,702 - LU632_RS01995 0.64 +0.3 393,838 - -0.6 393,962 + +0.6 393,988 + +0.8 394,047 - +1.9 394,214 + LU632_RS02000 0.62 -1.2 394,335 + -1.4 394,373 - -0.4 394,373 - +1.7 394,375 - +1.9 394,375 - -0.4 394,377 + +1.6 394,377 + +1.4 394,436 + LU632_RS02005 0.28 -1.0 394,440 + LU632_RS02005 0.30 -0.2 394,440 + LU632_RS02005 0.30 -0.2 394,440 + LU632_RS02005 0.30 -0.1 394,475 + LU632_RS02005 0.46 -0.4 394,475 + LU632_RS02005 0.46 -2.3 394,475 + LU632_RS02005 0.46 +0.2 394,475 + LU632_RS02005 0.46 +0.8 394,476 - LU632_RS02005 0.47 -1.8 394,476 - LU632_RS02005 0.47 -0.5 394,477 + LU632_RS02005 0.47 -0.9 394,478 - LU632_RS02005 0.47 -0.4 394,490 + LU632_RS02005 0.53 -1.2 394,490 + LU632_RS02005 0.53 -0.6 394,514 + LU632_RS02005 0.64 +0.3 394,515 - LU632_RS02005 0.65 -1.4 394,517 - LU632_RS02005 0.65 -0.2 394,549 + LU632_RS02005 0.80 +1.0 394,597 - -0.5
Or see this region's nucleotide sequence