Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS01865

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
357,467	-				+1.6
357,485	+				+0.5
357,486	-				-0.3
357,508	+				+1.3
357,531	-				+0.1
357,531	-				+0.5
357,564	-				+0.2
357,566	+				+0.0
357,566	+				-1.1
357,635	-				-0.2
357,722	+				+0.2
357,781	+		LU632_RS01860	0.17	+1.0
357,781	+		LU632_RS01860	0.17	-0.2
357,782	-		LU632_RS01860	0.17	-1.2
357,806	-		LU632_RS01860	0.22	-2.0
357,874	+		LU632_RS01860	0.37	+0.8
357,875	-		LU632_RS01860	0.37	-1.4
357,938	-		LU632_RS01860	0.51	-0.9
358,000	+		LU632_RS01860	0.65	+1.3
358,000	+		LU632_RS01860	0.65	-0.4
358,120	+				-1.8
358,120	+				+1.2
358,159	-				-1.3
358,222	-				-0.7
358,229	-				+1.4
358,229	-				-1.4
358,229	-				-0.2