Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01825 and LU632_RS01830 overlap by 7 nucleotides LU632_RS01830 and LU632_RS01835 are separated by 171 nucleotides LU632_RS01835 and LU632_RS01840 are separated by 178 nucleotides
LU632_RS01825: LU632_RS01825 - IS5 family transposase, at 351,201 to 351,986
_RS01825
LU632_RS01830: LU632_RS01830 - IS1 family transposase, at 351,980 to 352,677
_RS01830
LU632_RS01835: LU632_RS01835 - transposase, at 352,849 to 353,495
_RS01835
LU632_RS01840: LU632_RS01840 - protein-disulfide reductase DsbD, at 353,674 to 355,362
_RS01840
Position (kb) 352
353
354 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 352.702 kb on + strand at 352.747 kb on + strand at 352.748 kb on - strand at 352.775 kb on + strand at 352.775 kb on + strand at 352.775 kb on + strand at 352.776 kb on - strand at 352.778 kb on - strand at 352.778 kb on - strand at 352.788 kb on + strand at 353.585 kb on - strand at 353.593 kb on + strand at 353.593 kb on + strand at 353.601 kb on + strand at 353.601 kb on + strand at 353.602 kb on - strand at 353.602 kb on - strand at 353.602 kb on - strand at 353.602 kb on - strand at 353.602 kb on - strand at 353.602 kb on - strand at 353.605 kb on + strand at 353.676 kb on - strand at 353.794 kb on + strand at 353.795 kb on - strand at 353.795 kb on - strand at 353.832 kb on + strand at 353.904 kb on + strand, within LU632_RS01840 at 353.905 kb on - strand, within LU632_RS01840 at 353.905 kb on - strand, within LU632_RS01840 at 353.907 kb on - strand, within LU632_RS01840 at 354.048 kb on + strand, within LU632_RS01840 at 354.349 kb on + strand, within LU632_RS01840 at 354.374 kb on + strand, within LU632_RS01840 at 354.374 kb on + strand, within LU632_RS01840 at 354.374 kb on + strand, within LU632_RS01840 at 354.374 kb on + strand, within LU632_RS01840 at 354.374 kb on + strand, within LU632_RS01840 at 354.374 kb on + strand, within LU632_RS01840 at 354.374 kb on + strand, within LU632_RS01840 at 354.375 kb on - strand, within LU632_RS01840 at 354.375 kb on - strand, within LU632_RS01840 at 354.380 kb on + strand, within LU632_RS01840 at 354.381 kb on - strand, within LU632_RS01840 at 354.381 kb on - strand, within LU632_RS01840 at 354.381 kb on - strand, within LU632_RS01840 at 354.425 kb on + strand, within LU632_RS01840 at 354.425 kb on + strand, within LU632_RS01840 at 354.426 kb on - strand, within LU632_RS01840 at 354.426 kb on - strand, within LU632_RS01840 at 354.426 kb on - strand, within LU632_RS01840
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 352,702 + -0.2 352,747 + +0.0 352,748 - +3.2 352,775 + +1.0 352,775 + +0.6 352,775 + +0.8 352,776 - -2.7 352,778 - +0.7 352,778 - -0.5 352,788 + +0.1 353,585 - -0.3 353,593 + -1.3 353,593 + +0.3 353,601 + -1.3 353,601 + +0.4 353,602 - -0.8 353,602 - -0.5 353,602 - +0.0 353,602 - +0.5 353,602 - +0.1 353,602 - +0.0 353,605 + -0.6 353,676 - -1.4 353,794 + -1.1 353,795 - +0.2 353,795 - -0.2 353,832 + +0.4 353,904 + LU632_RS01840 0.14 -0.1 353,905 - LU632_RS01840 0.14 -1.4 353,905 - LU632_RS01840 0.14 +0.7 353,907 - LU632_RS01840 0.14 -2.4 354,048 + LU632_RS01840 0.22 -0.4 354,349 + LU632_RS01840 0.40 -1.2 354,374 + LU632_RS01840 0.41 -0.5 354,374 + LU632_RS01840 0.41 +1.1 354,374 + LU632_RS01840 0.41 -1.2 354,374 + LU632_RS01840 0.41 -1.0 354,374 + LU632_RS01840 0.41 -0.4 354,374 + LU632_RS01840 0.41 +0.9 354,374 + LU632_RS01840 0.41 -0.4 354,375 - LU632_RS01840 0.42 -0.1 354,375 - LU632_RS01840 0.42 +1.6 354,380 + LU632_RS01840 0.42 +0.7 354,381 - LU632_RS01840 0.42 +1.4 354,381 - LU632_RS01840 0.42 -2.7 354,381 - LU632_RS01840 0.42 -2.1 354,425 + LU632_RS01840 0.44 -2.0 354,425 + LU632_RS01840 0.44 -1.2 354,426 - LU632_RS01840 0.45 -1.0 354,426 - LU632_RS01840 0.45 -0.7 354,426 - LU632_RS01840 0.45 +0.5
Or see this region's nucleotide sequence