Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01585 and LU632_RS01590 are separated by 160 nucleotides LU632_RS01590 and LU632_RS01595 are separated by 23 nucleotides
LU632_RS01585: LU632_RS01585 - terminase family protein, at 316,870 to 318,600
_RS01585
LU632_RS01590: LU632_RS01590 - GPO family capsid scaffolding protein, at 318,761 to 319,597
_RS01590
LU632_RS01595: LU632_RS01595 - phage major capsid protein, P2 family, at 319,621 to 320,670
_RS01595
Position (kb) 318
319
320 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 317.798 kb on + strand, within LU632_RS01585 at 317.799 kb on - strand, within LU632_RS01585 at 317.799 kb on - strand, within LU632_RS01585 at 317.829 kb on + strand, within LU632_RS01585 at 317.904 kb on - strand, within LU632_RS01585 at 317.929 kb on - strand, within LU632_RS01585 at 318.065 kb on - strand, within LU632_RS01585 at 318.065 kb on - strand, within LU632_RS01585 at 318.134 kb on + strand, within LU632_RS01585 at 318.580 kb on + strand at 318.580 kb on + strand at 318.595 kb on + strand at 318.595 kb on + strand at 318.596 kb on - strand at 318.596 kb on - strand at 318.596 kb on - strand at 318.733 kb on - strand at 318.776 kb on - strand at 318.787 kb on + strand at 318.915 kb on - strand, within LU632_RS01590 at 318.982 kb on + strand, within LU632_RS01590 at 319.127 kb on + strand, within LU632_RS01590 at 319.127 kb on + strand, within LU632_RS01590 at 319.127 kb on + strand, within LU632_RS01590 at 319.128 kb on - strand, within LU632_RS01590 at 319.128 kb on - strand, within LU632_RS01590 at 319.213 kb on + strand, within LU632_RS01590 at 319.213 kb on + strand, within LU632_RS01590 at 319.213 kb on + strand, within LU632_RS01590 at 319.214 kb on - strand, within LU632_RS01590 at 319.598 kb on + strand at 319.654 kb on + strand at 319.677 kb on + strand at 319.686 kb on - strand at 319.686 kb on - strand at 319.918 kb on + strand, within LU632_RS01595 at 319.918 kb on + strand, within LU632_RS01595 at 319.919 kb on - strand, within LU632_RS01595 at 319.919 kb on - strand, within LU632_RS01595 at 319.919 kb on - strand, within LU632_RS01595 at 319.939 kb on + strand, within LU632_RS01595 at 319.939 kb on + strand, within LU632_RS01595 at 319.940 kb on - strand, within LU632_RS01595 at 319.940 kb on - strand, within LU632_RS01595 at 319.983 kb on + strand, within LU632_RS01595 at 320.071 kb on + strand, within LU632_RS01595 at 320.072 kb on - strand, within LU632_RS01595 at 320.072 kb on - strand, within LU632_RS01595 at 320.202 kb on + strand, within LU632_RS01595 at 320.203 kb on - strand, within LU632_RS01595 at 320.292 kb on + strand, within LU632_RS01595 at 320.427 kb on - strand, within LU632_RS01595 at 320.455 kb on + strand, within LU632_RS01595 at 320.455 kb on + strand, within LU632_RS01595 at 320.465 kb on + strand, within LU632_RS01595 at 320.506 kb on + strand, within LU632_RS01595 at 320.506 kb on + strand, within LU632_RS01595 at 320.507 kb on - strand, within LU632_RS01595 at 320.509 kb on + strand, within LU632_RS01595 at 320.510 kb on - strand, within LU632_RS01595
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 317,798 + LU632_RS01585 0.54 +0.5 317,799 - LU632_RS01585 0.54 -0.4 317,799 - LU632_RS01585 0.54 +3.2 317,829 + LU632_RS01585 0.55 -0.4 317,904 - LU632_RS01585 0.60 +1.2 317,929 - LU632_RS01585 0.61 +0.4 318,065 - LU632_RS01585 0.69 -0.8 318,065 - LU632_RS01585 0.69 +0.9 318,134 + LU632_RS01585 0.73 -0.7 318,580 + -1.2 318,580 + -1.2 318,595 + -2.8 318,595 + +1.7 318,596 - +0.6 318,596 - -0.4 318,596 - -1.4 318,733 - +0.7 318,776 - -0.4 318,787 + -1.5 318,915 - LU632_RS01590 0.18 -1.7 318,982 + LU632_RS01590 0.26 +0.2 319,127 + LU632_RS01590 0.44 -1.0 319,127 + LU632_RS01590 0.44 -0.3 319,127 + LU632_RS01590 0.44 -1.8 319,128 - LU632_RS01590 0.44 -1.0 319,128 - LU632_RS01590 0.44 +0.6 319,213 + LU632_RS01590 0.54 -2.0 319,213 + LU632_RS01590 0.54 +0.0 319,213 + LU632_RS01590 0.54 -0.3 319,214 - LU632_RS01590 0.54 -0.7 319,598 + -0.3 319,654 + +0.2 319,677 + +1.9 319,686 - -0.3 319,686 - -0.5 319,918 + LU632_RS01595 0.28 -0.9 319,918 + LU632_RS01595 0.28 -0.4 319,919 - LU632_RS01595 0.28 -0.6 319,919 - LU632_RS01595 0.28 -1.4 319,919 - LU632_RS01595 0.28 -0.0 319,939 + LU632_RS01595 0.30 +1.1 319,939 + LU632_RS01595 0.30 -1.0 319,940 - LU632_RS01595 0.30 -0.7 319,940 - LU632_RS01595 0.30 +0.3 319,983 + LU632_RS01595 0.34 -0.8 320,071 + LU632_RS01595 0.43 +0.6 320,072 - LU632_RS01595 0.43 +3.8 320,072 - LU632_RS01595 0.43 -1.4 320,202 + LU632_RS01595 0.55 -1.0 320,203 - LU632_RS01595 0.55 +1.9 320,292 + LU632_RS01595 0.64 +1.4 320,427 - LU632_RS01595 0.77 +0.2 320,455 + LU632_RS01595 0.79 +1.1 320,455 + LU632_RS01595 0.79 -1.6 320,465 + LU632_RS01595 0.80 +0.0 320,506 + LU632_RS01595 0.84 -0.8 320,506 + LU632_RS01595 0.84 -0.7 320,507 - LU632_RS01595 0.84 +0.2 320,509 + LU632_RS01595 0.85 +0.0 320,510 - LU632_RS01595 0.85 -1.6
Or see this region's nucleotide sequence