Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01500 and LU632_RS01505 overlap by 32 nucleotides LU632_RS01505 and LU632_RS01510 are separated by 743 nucleotides LU632_RS01510 and LU632_RS01515 are separated by 81 nucleotides LU632_RS01515 and LU632_RS01520 overlap by 4 nucleotides
LU632_RS01500: LU632_RS01500 - hypothetical protein, at 305,326 to 305,508
_RS01500
LU632_RS01505: LU632_RS01505 - hypothetical protein, at 305,477 to 305,716
_RS01505
LU632_RS01510: LU632_RS01510 - hypothetical protein, at 306,460 to 306,852
_RS01510
LU632_RS01515: LU632_RS01515 - 3'-5' exoribonuclease, at 306,934 to 307,494
_RS01515
LU632_RS01520: LU632_RS01520 - Dam family site-specific DNA-(adenine-N6)-methyltransferase, at 307,491 to 308,333
_RS01520
Position (kb) 306
307 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 305.525 kb on + strand, within LU632_RS01505 at 305.567 kb on + strand, within LU632_RS01505 at 305.749 kb on - strand at 305.755 kb on - strand at 305.755 kb on - strand at 305.780 kb on - strand at 305.857 kb on - strand at 305.910 kb on - strand at 306.107 kb on - strand at 306.107 kb on - strand at 306.315 kb on - strand at 306.412 kb on + strand at 306.413 kb on - strand at 306.413 kb on - strand at 306.417 kb on - strand at 306.454 kb on - strand at 306.478 kb on - strand at 306.500 kb on + strand, within LU632_RS01510 at 306.500 kb on + strand, within LU632_RS01510 at 306.501 kb on - strand, within LU632_RS01510 at 306.851 kb on - strand at 306.933 kb on - strand at 306.933 kb on - strand at 306.933 kb on - strand at 306.942 kb on + strand at 307.008 kb on + strand, within LU632_RS01515 at 307.009 kb on - strand, within LU632_RS01515 at 307.045 kb on - strand, within LU632_RS01515 at 307.110 kb on + strand, within LU632_RS01515 at 307.128 kb on - strand, within LU632_RS01515 at 307.170 kb on - strand, within LU632_RS01515 at 307.170 kb on - strand, within LU632_RS01515 at 307.185 kb on - strand, within LU632_RS01515 at 307.188 kb on + strand, within LU632_RS01515 at 307.188 kb on + strand, within LU632_RS01515 at 307.189 kb on - strand, within LU632_RS01515 at 307.189 kb on - strand, within LU632_RS01515 at 307.249 kb on + strand, within LU632_RS01515 at 307.249 kb on + strand, within LU632_RS01515 at 307.254 kb on + strand, within LU632_RS01515 at 307.264 kb on - strand, within LU632_RS01515 at 307.264 kb on - strand, within LU632_RS01515 at 307.268 kb on - strand, within LU632_RS01515 at 307.268 kb on - strand, within LU632_RS01515 at 307.354 kb on - strand, within LU632_RS01515 at 307.354 kb on - strand, within LU632_RS01515 at 307.402 kb on - strand, within LU632_RS01515 at 307.538 kb on - strand at 307.546 kb on + strand at 307.546 kb on + strand at 307.554 kb on + strand at 307.555 kb on - strand at 307.632 kb on + strand, within LU632_RS01520 at 307.752 kb on + strand, within LU632_RS01520 at 307.753 kb on - strand, within LU632_RS01520 at 307.771 kb on + strand, within LU632_RS01520 at 307.803 kb on + strand, within LU632_RS01520 at 307.803 kb on + strand, within LU632_RS01520
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 305,525 + LU632_RS01505 0.20 +0.9 305,567 + LU632_RS01505 0.38 +0.0 305,749 - -0.2 305,755 - -1.5 305,755 - -2.8 305,780 - +1.1 305,857 - -0.1 305,910 - +0.2 306,107 - +0.5 306,107 - -0.8 306,315 - +0.3 306,412 + +0.0 306,413 - -1.4 306,413 - -0.3 306,417 - +0.2 306,454 - +0.7 306,478 - +0.0 306,500 + LU632_RS01510 0.10 -0.2 306,500 + LU632_RS01510 0.10 +0.0 306,501 - LU632_RS01510 0.10 +0.6 306,851 - +1.4 306,933 - -0.8 306,933 - +0.4 306,933 - +0.0 306,942 + -2.2 307,008 + LU632_RS01515 0.13 -0.2 307,009 - LU632_RS01515 0.13 -0.5 307,045 - LU632_RS01515 0.20 -0.8 307,110 + LU632_RS01515 0.31 +0.5 307,128 - LU632_RS01515 0.35 +0.3 307,170 - LU632_RS01515 0.42 +0.0 307,170 - LU632_RS01515 0.42 +1.2 307,185 - LU632_RS01515 0.45 -0.6 307,188 + LU632_RS01515 0.45 -0.9 307,188 + LU632_RS01515 0.45 -0.5 307,189 - LU632_RS01515 0.45 -0.6 307,189 - LU632_RS01515 0.45 +0.6 307,249 + LU632_RS01515 0.56 -0.3 307,249 + LU632_RS01515 0.56 +2.3 307,254 + LU632_RS01515 0.57 +0.4 307,264 - LU632_RS01515 0.59 -0.4 307,264 - LU632_RS01515 0.59 -0.2 307,268 - LU632_RS01515 0.60 -0.1 307,268 - LU632_RS01515 0.60 -0.6 307,354 - LU632_RS01515 0.75 +0.0 307,354 - LU632_RS01515 0.75 +1.6 307,402 - LU632_RS01515 0.83 -0.5 307,538 - -2.0 307,546 + +0.2 307,546 + +1.6 307,554 + +1.9 307,555 - +0.9 307,632 + LU632_RS01520 0.17 +0.9 307,752 + LU632_RS01520 0.31 +0.0 307,753 - LU632_RS01520 0.31 -1.1 307,771 + LU632_RS01520 0.33 -2.4 307,803 + LU632_RS01520 0.37 +0.9 307,803 + LU632_RS01520 0.37 -0.8
Or see this region's nucleotide sequence