Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00835 and zinT are separated by 76 nucleotides zinT and LU632_RS00845 are separated by 181 nucleotides LU632_RS00845 and LU632_RS00850 overlap by 4 nucleotides
LU632_RS00835: LU632_RS00835 - DeoR/GlpR family DNA-binding transcription regulator, at 181,888 to 182,664
_RS00835
LU632_RS00840: zinT - metal-binding protein ZinT, at 182,741 to 183,388
zinT
LU632_RS00845: LU632_RS00845 - ABC transporter ATP-binding protein/permease, at 183,570 to 185,403
_RS00845
LU632_RS00850: LU632_RS00850 - GNAT family N-acetyltransferase, at 185,400 to 186,524
_RS00850
Position (kb) 183
184
185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 182.577 kb on + strand, within LU632_RS00835 at 182.577 kb on + strand, within LU632_RS00835 at 182.617 kb on + strand at 182.692 kb on + strand at 182.692 kb on + strand at 182.910 kb on + strand, within zinT at 182.911 kb on - strand, within zinT at 182.979 kb on + strand, within zinT at 182.979 kb on - strand, within zinT at 182.980 kb on - strand, within zinT at 183.003 kb on + strand, within zinT at 183.004 kb on - strand, within zinT at 183.004 kb on - strand, within zinT at 183.010 kb on - strand, within zinT at 183.068 kb on - strand, within zinT at 183.074 kb on - strand, within zinT at 183.102 kb on + strand, within zinT at 183.102 kb on + strand, within zinT at 183.106 kb on - strand, within zinT at 183.182 kb on + strand, within zinT at 183.183 kb on - strand, within zinT at 183.187 kb on - strand, within zinT at 183.193 kb on + strand, within zinT at 183.449 kb on + strand at 183.451 kb on + strand at 183.452 kb on - strand at 183.504 kb on + strand at 183.637 kb on - strand at 183.656 kb on - strand at 183.665 kb on - strand at 183.698 kb on + strand at 183.698 kb on + strand at 183.728 kb on + strand at 183.729 kb on - strand at 183.729 kb on - strand at 183.734 kb on + strand at 183.774 kb on - strand, within LU632_RS00845 at 183.938 kb on + strand, within LU632_RS00845 at 183.939 kb on - strand, within LU632_RS00845 at 183.942 kb on + strand, within LU632_RS00845 at 183.942 kb on + strand, within LU632_RS00845 at 183.942 kb on + strand, within LU632_RS00845 at 183.942 kb on + strand, within LU632_RS00845 at 183.943 kb on - strand, within LU632_RS00845 at 183.943 kb on - strand, within LU632_RS00845 at 183.943 kb on - strand, within LU632_RS00845 at 183.943 kb on - strand, within LU632_RS00845 at 183.943 kb on - strand, within LU632_RS00845 at 184.078 kb on - strand, within LU632_RS00845 at 184.086 kb on - strand, within LU632_RS00845 at 184.093 kb on + strand, within LU632_RS00845 at 184.094 kb on - strand, within LU632_RS00845 at 184.094 kb on - strand, within LU632_RS00845 at 184.180 kb on + strand, within LU632_RS00845 at 184.181 kb on - strand, within LU632_RS00845 at 184.189 kb on + strand, within LU632_RS00845 at 184.309 kb on - strand, within LU632_RS00845 at 184.399 kb on - strand, within LU632_RS00845 at 184.526 kb on + strand, within LU632_RS00845 at 184.526 kb on + strand, within LU632_RS00845 at 184.579 kb on + strand, within LU632_RS00845 at 184.680 kb on - strand, within LU632_RS00845 at 184.802 kb on + strand, within LU632_RS00845 at 184.803 kb on - strand, within LU632_RS00845 at 184.803 kb on - strand, within LU632_RS00845 at 184.855 kb on - strand, within LU632_RS00845 at 184.855 kb on - strand, within LU632_RS00845 at 184.896 kb on + strand, within LU632_RS00845 at 184.896 kb on + strand, within LU632_RS00845 at 184.896 kb on + strand, within LU632_RS00845 at 184.896 kb on + strand, within LU632_RS00845 at 184.897 kb on - strand, within LU632_RS00845 at 184.901 kb on + strand, within LU632_RS00845 at 184.912 kb on + strand, within LU632_RS00845 at 184.912 kb on + strand, within LU632_RS00845 at 184.913 kb on - strand, within LU632_RS00845 at 184.913 kb on - strand, within LU632_RS00845 at 184.941 kb on + strand, within LU632_RS00845 at 184.942 kb on - strand, within LU632_RS00845 at 184.942 kb on - strand, within LU632_RS00845 at 185.103 kb on - strand, within LU632_RS00845 at 185.103 kb on - strand, within LU632_RS00845 at 185.226 kb on - strand at 185.354 kb on - strand at 185.354 kb on - strand at 185.354 kb on - strand at 185.824 kb on + strand, within LU632_RS00850 at 185.842 kb on + strand, within LU632_RS00850 at 185.842 kb on + strand, within LU632_RS00850 at 185.863 kb on + strand, within LU632_RS00850 at 185.964 kb on - strand, within LU632_RS00850 at 185.969 kb on + strand, within LU632_RS00850 at 186.189 kb on + strand, within LU632_RS00850 at 186.190 kb on - strand, within LU632_RS00850 at 186.242 kb on - strand, within LU632_RS00850 at 186.296 kb on - strand, within LU632_RS00850 at 186.296 kb on - strand, within LU632_RS00850 at 186.296 kb on - strand, within LU632_RS00850
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 182,577 + LU632_RS00835 0.89 +5.2 182,577 + LU632_RS00835 0.89 +5.2 182,617 + +6.5 182,692 + -0.7 182,692 + -0.9 182,910 + zinT LU632_RS00840 0.26 -1.3 182,911 - zinT LU632_RS00840 0.26 +0.8 182,979 + zinT LU632_RS00840 0.37 +1.9 182,979 - zinT LU632_RS00840 0.37 +0.2 182,980 - zinT LU632_RS00840 0.37 +0.0 183,003 + zinT LU632_RS00840 0.40 +0.2 183,004 - zinT LU632_RS00840 0.41 +0.6 183,004 - zinT LU632_RS00840 0.41 -0.7 183,010 - zinT LU632_RS00840 0.42 -0.4 183,068 - zinT LU632_RS00840 0.50 -0.3 183,074 - zinT LU632_RS00840 0.51 -2.1 183,102 + zinT LU632_RS00840 0.56 -0.2 183,102 + zinT LU632_RS00840 0.56 +2.2 183,106 - zinT LU632_RS00840 0.56 -2.8 183,182 + zinT LU632_RS00840 0.68 -2.3 183,183 - zinT LU632_RS00840 0.68 +0.5 183,187 - zinT LU632_RS00840 0.69 +0.0 183,193 + zinT LU632_RS00840 0.70 +0.6 183,449 + -1.0 183,451 + -0.1 183,452 - +0.5 183,504 + -1.0 183,637 - +0.0 183,656 - +0.8 183,665 - -1.5 183,698 + +0.0 183,698 + +0.8 183,728 + -1.3 183,729 - +1.6 183,729 - -0.8 183,734 + +0.2 183,774 - LU632_RS00845 0.11 +2.4 183,938 + LU632_RS00845 0.20 -2.7 183,939 - LU632_RS00845 0.20 +0.1 183,942 + LU632_RS00845 0.20 -0.5 183,942 + LU632_RS00845 0.20 +0.2 183,942 + LU632_RS00845 0.20 -1.0 183,942 + LU632_RS00845 0.20 -0.0 183,943 - LU632_RS00845 0.20 +0.6 183,943 - LU632_RS00845 0.20 +0.3 183,943 - LU632_RS00845 0.20 -1.3 183,943 - LU632_RS00845 0.20 -1.8 183,943 - LU632_RS00845 0.20 +1.6 184,078 - LU632_RS00845 0.28 -1.4 184,086 - LU632_RS00845 0.28 +2.5 184,093 + LU632_RS00845 0.29 -0.1 184,094 - LU632_RS00845 0.29 +2.2 184,094 - LU632_RS00845 0.29 +0.6 184,180 + LU632_RS00845 0.33 -0.4 184,181 - LU632_RS00845 0.33 +0.1 184,189 + LU632_RS00845 0.34 +1.3 184,309 - LU632_RS00845 0.40 -1.4 184,399 - LU632_RS00845 0.45 +0.6 184,526 + LU632_RS00845 0.52 +1.6 184,526 + LU632_RS00845 0.52 +1.2 184,579 + LU632_RS00845 0.55 -0.4 184,680 - LU632_RS00845 0.61 +0.7 184,802 + LU632_RS00845 0.67 +0.2 184,803 - LU632_RS00845 0.67 -2.7 184,803 - LU632_RS00845 0.67 -2.1 184,855 - LU632_RS00845 0.70 -1.4 184,855 - LU632_RS00845 0.70 -0.2 184,896 + LU632_RS00845 0.72 -0.1 184,896 + LU632_RS00845 0.72 -0.2 184,896 + LU632_RS00845 0.72 +0.3 184,896 + LU632_RS00845 0.72 +1.6 184,897 - LU632_RS00845 0.72 -0.4 184,901 + LU632_RS00845 0.73 +0.6 184,912 + LU632_RS00845 0.73 -0.6 184,912 + LU632_RS00845 0.73 +0.6 184,913 - LU632_RS00845 0.73 -1.4 184,913 - LU632_RS00845 0.73 +0.4 184,941 + LU632_RS00845 0.75 -2.7 184,942 - LU632_RS00845 0.75 -1.3 184,942 - LU632_RS00845 0.75 +1.6 185,103 - LU632_RS00845 0.84 +1.1 185,103 - LU632_RS00845 0.84 -1.0 185,226 - +0.6 185,354 - +0.9 185,354 - -0.5 185,354 - -1.5 185,824 + LU632_RS00850 0.38 +0.6 185,842 + LU632_RS00850 0.39 +0.6 185,842 + LU632_RS00850 0.39 -0.6 185,863 + LU632_RS00850 0.41 +1.0 185,964 - LU632_RS00850 0.50 +0.3 185,969 + LU632_RS00850 0.51 +0.0 186,189 + LU632_RS00850 0.70 +0.2 186,190 - LU632_RS00850 0.70 -1.5 186,242 - LU632_RS00850 0.75 -1.7 186,296 - LU632_RS00850 0.80 +0.2 186,296 - LU632_RS00850 0.80 -0.0 186,296 - LU632_RS00850 0.80 -1.8
Or see this region's nucleotide sequence