Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00775 and kdpF are separated by 447 nucleotides kdpF and kdpA overlap by 1 nucleotides kdpA and kdpB are separated by 18 nucleotides
LU632_RS00775: LU632_RS00775 - IS481 family transposase, at 165,992 to 167,032
_RS00775
LU632_RS00780: kdpF - K(+)-transporting ATPase subunit F, at 167,480 to 167,569
kdpF
LU632_RS00785: kdpA - potassium-transporting ATPase subunit KdpA, at 167,569 to 169,254
kdpA
LU632_RS00790: kdpB - potassium-transporting ATPase subunit KdpB, at 169,273 to 171,321
kdpB
Position (kb) 167
168
169
170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 167.152 kb on + strand at 167.153 kb on - strand at 167.236 kb on - strand at 167.360 kb on - strand at 167.370 kb on - strand at 167.370 kb on - strand at 167.370 kb on - strand at 167.370 kb on - strand at 167.447 kb on + strand at 167.447 kb on + strand at 167.447 kb on + strand at 167.447 kb on + strand at 167.447 kb on + strand at 167.447 kb on + strand at 167.447 kb on + strand at 167.493 kb on + strand, within kdpF at 167.493 kb on + strand, within kdpF at 167.538 kb on + strand, within kdpF at 167.538 kb on + strand, within kdpF at 167.538 kb on + strand, within kdpF at 167.539 kb on - strand, within kdpF at 167.539 kb on - strand, within kdpF at 167.539 kb on - strand, within kdpF at 167.540 kb on + strand, within kdpF at 167.602 kb on + strand at 167.602 kb on + strand at 167.605 kb on - strand at 167.684 kb on + strand at 167.685 kb on - strand at 167.799 kb on + strand, within kdpA at 168.276 kb on + strand, within kdpA at 168.484 kb on - strand, within kdpA at 168.484 kb on - strand, within kdpA at 168.683 kb on + strand, within kdpA at 168.683 kb on + strand, within kdpA at 168.684 kb on - strand, within kdpA at 168.741 kb on - strand, within kdpA at 168.778 kb on + strand, within kdpA at 168.779 kb on - strand, within kdpA at 168.999 kb on + strand, within kdpA at 169.053 kb on + strand, within kdpA at 169.162 kb on - strand at 169.162 kb on - strand at 169.198 kb on - strand at 169.282 kb on - strand at 169.495 kb on - strand, within kdpB at 169.586 kb on - strand, within kdpB at 169.612 kb on + strand, within kdpB at 169.612 kb on + strand, within kdpB at 169.613 kb on - strand, within kdpB at 169.613 kb on - strand, within kdpB at 169.617 kb on + strand, within kdpB at 169.617 kb on + strand, within kdpB at 169.617 kb on + strand, within kdpB at 169.664 kb on + strand, within kdpB at 169.664 kb on + strand, within kdpB at 169.664 kb on + strand, within kdpB at 169.664 kb on + strand, within kdpB at 169.664 kb on + strand, within kdpB at 169.665 kb on - strand, within kdpB at 169.665 kb on - strand, within kdpB at 169.665 kb on - strand, within kdpB at 169.689 kb on + strand, within kdpB at 169.690 kb on - strand, within kdpB at 169.801 kb on - strand, within kdpB at 169.929 kb on - strand, within kdpB at 170.048 kb on + strand, within kdpB at 170.049 kb on - strand, within kdpB at 170.051 kb on + strand, within kdpB at 170.051 kb on + strand, within kdpB at 170.051 kb on + strand, within kdpB at 170.052 kb on - strand, within kdpB at 170.052 kb on - strand, within kdpB
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 167,152 + +0.2 167,153 - +0.9 167,236 - +0.1 167,360 - -1.2 167,370 - -0.3 167,370 - +0.1 167,370 - -1.0 167,370 - -1.0 167,447 + +0.4 167,447 + +0.6 167,447 + +0.7 167,447 + +1.7 167,447 + -1.7 167,447 + +0.3 167,447 + +3.2 167,493 + kdpF LU632_RS00780 0.14 -0.1 167,493 + kdpF LU632_RS00780 0.14 -0.4 167,538 + kdpF LU632_RS00780 0.64 +1.0 167,538 + kdpF LU632_RS00780 0.64 -1.5 167,538 + kdpF LU632_RS00780 0.64 -0.4 167,539 - kdpF LU632_RS00780 0.66 -0.2 167,539 - kdpF LU632_RS00780 0.66 +1.1 167,539 - kdpF LU632_RS00780 0.66 -0.4 167,540 + kdpF LU632_RS00780 0.67 -2.0 167,602 + -0.2 167,602 + -0.5 167,605 - -0.0 167,684 + +0.1 167,685 - -0.9 167,799 + kdpA LU632_RS00785 0.14 +0.7 168,276 + kdpA LU632_RS00785 0.42 +2.2 168,484 - kdpA LU632_RS00785 0.54 -1.4 168,484 - kdpA LU632_RS00785 0.54 +0.7 168,683 + kdpA LU632_RS00785 0.66 +0.8 168,683 + kdpA LU632_RS00785 0.66 +0.4 168,684 - kdpA LU632_RS00785 0.66 -0.4 168,741 - kdpA LU632_RS00785 0.70 -1.2 168,778 + kdpA LU632_RS00785 0.72 +1.1 168,779 - kdpA LU632_RS00785 0.72 +0.5 168,999 + kdpA LU632_RS00785 0.85 +1.5 169,053 + kdpA LU632_RS00785 0.88 +0.1 169,162 - -2.9 169,162 - +0.1 169,198 - +0.6 169,282 - -0.6 169,495 - kdpB LU632_RS00790 0.11 +0.1 169,586 - kdpB LU632_RS00790 0.15 -0.4 169,612 + kdpB LU632_RS00790 0.17 -1.2 169,612 + kdpB LU632_RS00790 0.17 +0.4 169,613 - kdpB LU632_RS00790 0.17 -0.9 169,613 - kdpB LU632_RS00790 0.17 +1.6 169,617 + kdpB LU632_RS00790 0.17 -0.2 169,617 + kdpB LU632_RS00790 0.17 -0.7 169,617 + kdpB LU632_RS00790 0.17 -0.2 169,664 + kdpB LU632_RS00790 0.19 +0.5 169,664 + kdpB LU632_RS00790 0.19 -0.2 169,664 + kdpB LU632_RS00790 0.19 +1.8 169,664 + kdpB LU632_RS00790 0.19 +0.9 169,664 + kdpB LU632_RS00790 0.19 -0.2 169,665 - kdpB LU632_RS00790 0.19 -0.5 169,665 - kdpB LU632_RS00790 0.19 -0.7 169,665 - kdpB LU632_RS00790 0.19 -0.1 169,689 + kdpB LU632_RS00790 0.20 +0.6 169,690 - kdpB LU632_RS00790 0.20 -0.7 169,801 - kdpB LU632_RS00790 0.26 +0.3 169,929 - kdpB LU632_RS00790 0.32 +0.6 170,048 + kdpB LU632_RS00790 0.38 -2.0 170,049 - kdpB LU632_RS00790 0.38 -1.1 170,051 + kdpB LU632_RS00790 0.38 -0.4 170,051 + kdpB LU632_RS00790 0.38 -0.3 170,051 + kdpB LU632_RS00790 0.38 -0.2 170,052 - kdpB LU632_RS00790 0.38 -0.7 170,052 - kdpB LU632_RS00790 0.38 -2.4
Or see this region's nucleotide sequence