Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssK and tssL overlap by 1 nucleotides tssL and tssM are separated by 59 nucleotides
LU632_RS00730: tssK - type VI secretion system baseplate subunit TssK, at 153,605 to 154,951
tssK
LU632_RS00735: tssL - type VI secretion system protein TssL, long form, at 154,951 to 156,318
tssL
LU632_RS00740: tssM - type VI secretion system membrane subunit TssM, at 156,378 to 160,139
tssM
Position (kb) 154
155
156
157 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 154.027 kb on + strand, within tssK at 154.028 kb on - strand, within tssK at 154.101 kb on + strand, within tssK at 154.146 kb on + strand, within tssK at 154.147 kb on - strand, within tssK at 154.163 kb on + strand, within tssK at 154.164 kb on - strand, within tssK at 154.166 kb on - strand, within tssK at 154.316 kb on + strand, within tssK at 154.317 kb on - strand, within tssK at 154.343 kb on + strand, within tssK at 154.344 kb on - strand, within tssK at 154.344 kb on - strand, within tssK at 154.401 kb on - strand, within tssK at 154.431 kb on + strand, within tssK at 154.441 kb on + strand, within tssK at 154.530 kb on + strand, within tssK at 154.530 kb on + strand, within tssK at 154.539 kb on + strand, within tssK at 154.540 kb on - strand, within tssK at 154.543 kb on + strand, within tssK at 154.543 kb on + strand, within tssK at 154.544 kb on - strand, within tssK at 154.633 kb on - strand, within tssK at 154.777 kb on - strand, within tssK at 154.823 kb on + strand at 154.830 kb on - strand at 154.839 kb on + strand at 154.843 kb on + strand at 154.843 kb on + strand at 154.844 kb on - strand at 155.066 kb on - strand at 155.098 kb on - strand, within tssL at 155.225 kb on + strand, within tssL at 155.378 kb on + strand, within tssL at 155.378 kb on + strand, within tssL at 155.379 kb on - strand, within tssL at 155.382 kb on + strand, within tssL at 155.383 kb on - strand, within tssL at 155.383 kb on - strand, within tssL at 155.390 kb on + strand, within tssL at 155.409 kb on + strand, within tssL at 155.410 kb on - strand, within tssL at 155.533 kb on + strand, within tssL at 155.563 kb on - strand, within tssL at 155.791 kb on + strand, within tssL at 155.847 kb on - strand, within tssL at 155.849 kb on - strand, within tssL at 155.874 kb on + strand, within tssL at 156.044 kb on + strand, within tssL at 156.144 kb on + strand, within tssL at 156.259 kb on - strand at 156.259 kb on - strand at 156.423 kb on - strand at 156.600 kb on - strand at 156.674 kb on + strand at 156.675 kb on - strand at 156.679 kb on - strand at 156.725 kb on - strand at 156.793 kb on + strand, within tssM at 156.982 kb on + strand, within tssM at 156.986 kb on + strand, within tssM at 157.278 kb on + strand, within tssM
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 154,027 + tssK LU632_RS00730 0.31 -1.4 154,028 - tssK LU632_RS00730 0.31 -0.5 154,101 + tssK LU632_RS00730 0.37 -1.5 154,146 + tssK LU632_RS00730 0.40 +3.2 154,147 - tssK LU632_RS00730 0.40 -1.2 154,163 + tssK LU632_RS00730 0.41 -1.5 154,164 - tssK LU632_RS00730 0.41 -0.5 154,166 - tssK LU632_RS00730 0.42 -1.4 154,316 + tssK LU632_RS00730 0.53 +0.8 154,317 - tssK LU632_RS00730 0.53 +0.3 154,343 + tssK LU632_RS00730 0.55 +0.5 154,344 - tssK LU632_RS00730 0.55 +0.4 154,344 - tssK LU632_RS00730 0.55 -0.7 154,401 - tssK LU632_RS00730 0.59 +0.1 154,431 + tssK LU632_RS00730 0.61 +1.5 154,441 + tssK LU632_RS00730 0.62 +1.3 154,530 + tssK LU632_RS00730 0.69 +0.1 154,530 + tssK LU632_RS00730 0.69 -0.1 154,539 + tssK LU632_RS00730 0.69 -0.8 154,540 - tssK LU632_RS00730 0.69 +0.2 154,543 + tssK LU632_RS00730 0.70 +0.6 154,543 + tssK LU632_RS00730 0.70 -0.2 154,544 - tssK LU632_RS00730 0.70 -0.3 154,633 - tssK LU632_RS00730 0.76 -2.2 154,777 - tssK LU632_RS00730 0.87 -1.7 154,823 + +2.0 154,830 - +0.8 154,839 + -1.2 154,843 + -0.5 154,843 + -0.3 154,844 - +0.3 155,066 - -0.2 155,098 - tssL LU632_RS00735 0.11 -0.3 155,225 + tssL LU632_RS00735 0.20 +0.7 155,378 + tssL LU632_RS00735 0.31 +0.8 155,378 + tssL LU632_RS00735 0.31 +1.4 155,379 - tssL LU632_RS00735 0.31 +0.8 155,382 + tssL LU632_RS00735 0.32 +2.2 155,383 - tssL LU632_RS00735 0.32 -0.1 155,383 - tssL LU632_RS00735 0.32 -0.6 155,390 + tssL LU632_RS00735 0.32 +1.5 155,409 + tssL LU632_RS00735 0.33 +0.1 155,410 - tssL LU632_RS00735 0.34 -0.2 155,533 + tssL LU632_RS00735 0.43 -0.4 155,563 - tssL LU632_RS00735 0.45 -0.9 155,791 + tssL LU632_RS00735 0.61 -1.5 155,847 - tssL LU632_RS00735 0.65 +0.6 155,849 - tssL LU632_RS00735 0.66 +0.5 155,874 + tssL LU632_RS00735 0.67 -1.3 156,044 + tssL LU632_RS00735 0.80 +0.5 156,144 + tssL LU632_RS00735 0.87 -0.5 156,259 - +0.2 156,259 - -0.9 156,423 - +1.1 156,600 - -1.7 156,674 + -0.3 156,675 - +0.9 156,679 - -0.2 156,725 - +0.2 156,793 + tssM LU632_RS00740 0.11 -0.9 156,982 + tssM LU632_RS00740 0.16 -0.7 156,986 + tssM LU632_RS00740 0.16 +1.1 157,278 + tssM LU632_RS00740 0.24 +1.0
Or see this region's nucleotide sequence