Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssC and LU632_RS00720 are separated by 151 nucleotides LU632_RS00720 and tssJ are separated by 130 nucleotides tssJ and tssK are separated by 3 nucleotides
LU632_RS00715: tssC - type VI secretion system contractile sheath large subunit, at 150,786 to 152,285
tssC
LU632_RS00720: LU632_RS00720 - Hcp family type VI secretion system effector, at 152,437 to 152,922
_RS00720
LU632_RS00725: tssJ - type VI secretion system lipoprotein TssJ, at 153,053 to 153,601
tssJ
LU632_RS00730: tssK - type VI secretion system baseplate subunit TssK, at 153,605 to 154,951
tssK
Position (kb) 153
154 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 152.079 kb on + strand, within tssC at 152.079 kb on + strand, within tssC at 152.080 kb on - strand, within tssC at 152.084 kb on - strand, within tssC at 152.165 kb on - strand at 152.165 kb on - strand at 152.165 kb on - strand at 152.184 kb on + strand at 152.184 kb on + strand at 152.243 kb on - strand at 152.246 kb on + strand at 152.247 kb on - strand at 152.278 kb on + strand at 152.344 kb on + strand at 152.344 kb on + strand at 152.345 kb on - strand at 152.412 kb on - strand at 152.448 kb on + strand at 152.554 kb on - strand, within LU632_RS00720 at 152.605 kb on - strand, within LU632_RS00720 at 152.645 kb on + strand, within LU632_RS00720 at 152.645 kb on + strand, within LU632_RS00720 at 152.651 kb on - strand, within LU632_RS00720 at 152.671 kb on - strand, within LU632_RS00720 at 152.893 kb on + strand at 153.106 kb on - strand at 153.224 kb on - strand, within tssJ at 153.249 kb on + strand, within tssJ at 153.250 kb on - strand, within tssJ at 153.319 kb on + strand, within tssJ at 153.322 kb on + strand, within tssJ at 153.617 kb on - strand at 153.678 kb on - strand at 153.744 kb on - strand, within tssK at 153.750 kb on + strand, within tssK at 153.866 kb on - strand, within tssK at 153.882 kb on + strand, within tssK at 153.882 kb on + strand, within tssK at 153.925 kb on + strand, within tssK at 153.925 kb on + strand, within tssK at 154.027 kb on + strand, within tssK at 154.028 kb on - strand, within tssK at 154.101 kb on + strand, within tssK at 154.146 kb on + strand, within tssK at 154.147 kb on - strand, within tssK at 154.163 kb on + strand, within tssK at 154.164 kb on - strand, within tssK at 154.166 kb on - strand, within tssK at 154.316 kb on + strand, within tssK at 154.317 kb on - strand, within tssK at 154.343 kb on + strand, within tssK at 154.344 kb on - strand, within tssK at 154.344 kb on - strand, within tssK at 154.401 kb on - strand, within tssK at 154.431 kb on + strand, within tssK at 154.441 kb on + strand, within tssK at 154.530 kb on + strand, within tssK at 154.530 kb on + strand, within tssK at 154.539 kb on + strand, within tssK at 154.540 kb on - strand, within tssK at 154.543 kb on + strand, within tssK at 154.543 kb on + strand, within tssK at 154.544 kb on - strand, within tssK
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 152,079 + tssC LU632_RS00715 0.86 -1.0 152,079 + tssC LU632_RS00715 0.86 -0.7 152,080 - tssC LU632_RS00715 0.86 +0.8 152,084 - tssC LU632_RS00715 0.87 +2.8 152,165 - -0.5 152,165 - +0.9 152,165 - -0.7 152,184 + -0.8 152,184 + +0.2 152,243 - +1.4 152,246 + +3.9 152,247 - -1.3 152,278 + +0.5 152,344 + +0.4 152,344 + -0.4 152,345 - +0.8 152,412 - +1.0 152,448 + +2.6 152,554 - LU632_RS00720 0.24 +1.7 152,605 - LU632_RS00720 0.35 +0.1 152,645 + LU632_RS00720 0.43 -0.4 152,645 + LU632_RS00720 0.43 +7.1 152,651 - LU632_RS00720 0.44 +0.9 152,671 - LU632_RS00720 0.48 -0.7 152,893 + +0.0 153,106 - -0.4 153,224 - tssJ LU632_RS00725 0.31 -0.4 153,249 + tssJ LU632_RS00725 0.36 +0.2 153,250 - tssJ LU632_RS00725 0.36 -0.1 153,319 + tssJ LU632_RS00725 0.48 -0.9 153,322 + tssJ LU632_RS00725 0.49 +1.0 153,617 - -0.7 153,678 - +0.6 153,744 - tssK LU632_RS00730 0.10 -0.2 153,750 + tssK LU632_RS00730 0.11 +2.2 153,866 - tssK LU632_RS00730 0.19 -1.5 153,882 + tssK LU632_RS00730 0.21 -0.9 153,882 + tssK LU632_RS00730 0.21 -1.1 153,925 + tssK LU632_RS00730 0.24 +0.3 153,925 + tssK LU632_RS00730 0.24 -0.2 154,027 + tssK LU632_RS00730 0.31 -1.4 154,028 - tssK LU632_RS00730 0.31 -0.5 154,101 + tssK LU632_RS00730 0.37 -1.5 154,146 + tssK LU632_RS00730 0.40 +3.2 154,147 - tssK LU632_RS00730 0.40 -1.2 154,163 + tssK LU632_RS00730 0.41 -1.5 154,164 - tssK LU632_RS00730 0.41 -0.5 154,166 - tssK LU632_RS00730 0.42 -1.4 154,316 + tssK LU632_RS00730 0.53 +0.8 154,317 - tssK LU632_RS00730 0.53 +0.3 154,343 + tssK LU632_RS00730 0.55 +0.5 154,344 - tssK LU632_RS00730 0.55 +0.4 154,344 - tssK LU632_RS00730 0.55 -0.7 154,401 - tssK LU632_RS00730 0.59 +0.1 154,431 + tssK LU632_RS00730 0.61 +1.5 154,441 + tssK LU632_RS00730 0.62 +1.3 154,530 + tssK LU632_RS00730 0.69 +0.1 154,530 + tssK LU632_RS00730 0.69 -0.1 154,539 + tssK LU632_RS00730 0.69 -0.8 154,540 - tssK LU632_RS00730 0.69 +0.2 154,543 + tssK LU632_RS00730 0.70 +0.6 154,543 + tssK LU632_RS00730 0.70 -0.2 154,544 - tssK LU632_RS00730 0.70 -0.3
Or see this region's nucleotide sequence