Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00655

Experiment: plant=Squash; plant sample=QP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00650 and LU632_RS00655 overlap by 1 nucleotidesLU632_RS00655 and LU632_RS00660 overlap by 7 nucleotides LU632_RS00650: LU632_RS00650 - OmpA family protein, at 133,474 to 134,958 _RS00650 LU632_RS00655: LU632_RS00655 - DotU family type IV/VI secretion system protein, at 134,958 to 135,569 _RS00655 LU632_RS00660: LU632_RS00660 - UDP-N-acetylglucosamine-transferase, at 135,563 to 136,903 _RS00660 Position (kb) 134 135 136Strain fitness (log2 ratio) -2 -1 0 1 2at 133.971 kb on + strand, within LU632_RS00650at 134.244 kb on - strand, within LU632_RS00650at 134.362 kb on + strand, within LU632_RS00650at 134.362 kb on + strand, within LU632_RS00650at 134.438 kb on + strand, within LU632_RS00650at 134.581 kb on + strand, within LU632_RS00650at 134.591 kb on + strand, within LU632_RS00650at 134.591 kb on + strand, within LU632_RS00650at 134.592 kb on - strand, within LU632_RS00650at 134.592 kb on - strand, within LU632_RS00650at 134.593 kb on + strand, within LU632_RS00650at 134.593 kb on + strand, within LU632_RS00650at 134.596 kb on - strand, within LU632_RS00650at 134.682 kb on + strand, within LU632_RS00650at 135.390 kb on - strand, within LU632_RS00655at 135.530 kb on + strandat 136.083 kb on - strand, within LU632_RS00660at 136.194 kb on - strand, within LU632_RS00660at 136.196 kb on - strand, within LU632_RS00660at 136.196 kb on - strand, within LU632_RS00660

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA
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133,971 + LU632_RS00650 0.33 +1.7
134,244 - LU632_RS00650 0.52 -1.2
134,362 + LU632_RS00650 0.60 -1.9
134,362 + LU632_RS00650 0.60 +2.7
134,438 + LU632_RS00650 0.65 +0.2
134,581 + LU632_RS00650 0.75 +0.3
134,591 + LU632_RS00650 0.75 -0.4
134,591 + LU632_RS00650 0.75 +0.5
134,592 - LU632_RS00650 0.75 -0.5
134,592 - LU632_RS00650 0.75 +1.3
134,593 + LU632_RS00650 0.75 +0.7
134,593 + LU632_RS00650 0.75 -1.2
134,596 - LU632_RS00650 0.76 +0.2
134,682 + LU632_RS00650 0.81 +1.1
135,390 - LU632_RS00655 0.71 -1.4
135,530 + -0.6
136,083 - LU632_RS00660 0.39 +0.4
136,194 - LU632_RS00660 0.47 +0.6
136,196 - LU632_RS00660 0.47 -1.9
136,196 - LU632_RS00660 0.47 -0.0

Or see this region's nucleotide sequence