Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00260 and LU632_RS00265 are separated by 615 nucleotides LU632_RS00265 and dppB are separated by 212 nucleotides
LU632_RS00260: LU632_RS00260 - SMR family transporter, at 51,750 to 52,089
_RS00260
LU632_RS00265: LU632_RS00265 - ABC transporter substrate-binding protein, at 52,705 to 54,315
_RS00265
LU632_RS00270: dppB - dipeptide ABC transporter permease DppB, at 54,528 to 55,547
dppB
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 51.762 kb on + strand at 51.762 kb on + strand at 51.762 kb on + strand at 51.762 kb on + strand at 51.815 kb on - strand, within LU632_RS00260 at 51.864 kb on + strand, within LU632_RS00260 at 51.869 kb on + strand, within LU632_RS00260 at 51.869 kb on + strand, within LU632_RS00260 at 51.870 kb on - strand, within LU632_RS00260 at 51.870 kb on - strand, within LU632_RS00260 at 51.871 kb on + strand, within LU632_RS00260 at 51.871 kb on + strand, within LU632_RS00260 at 51.872 kb on - strand, within LU632_RS00260 at 51.872 kb on - strand, within LU632_RS00260 at 51.929 kb on + strand, within LU632_RS00260 at 51.934 kb on + strand, within LU632_RS00260 at 51.935 kb on - strand, within LU632_RS00260 at 51.935 kb on - strand, within LU632_RS00260 at 51.935 kb on - strand, within LU632_RS00260 at 52.056 kb on + strand at 52.063 kb on - strand at 52.162 kb on - strand at 52.162 kb on - strand at 52.495 kb on + strand at 52.603 kb on + strand at 52.646 kb on + strand at 52.710 kb on + strand at 52.736 kb on + strand at 52.788 kb on + strand at 52.789 kb on - strand at 52.801 kb on + strand at 52.861 kb on + strand at 52.862 kb on - strand at 52.886 kb on - strand, within LU632_RS00265 at 52.975 kb on + strand, within LU632_RS00265 at 53.060 kb on + strand, within LU632_RS00265 at 53.061 kb on - strand, within LU632_RS00265 at 53.061 kb on - strand, within LU632_RS00265 at 53.098 kb on + strand, within LU632_RS00265 at 53.099 kb on - strand, within LU632_RS00265 at 53.099 kb on - strand, within LU632_RS00265 at 53.128 kb on + strand, within LU632_RS00265 at 53.129 kb on - strand, within LU632_RS00265 at 53.129 kb on - strand, within LU632_RS00265 at 53.188 kb on - strand, within LU632_RS00265 at 53.188 kb on - strand, within LU632_RS00265 at 53.256 kb on + strand, within LU632_RS00265 at 53.256 kb on + strand, within LU632_RS00265 at 53.258 kb on + strand, within LU632_RS00265 at 53.259 kb on - strand, within LU632_RS00265 at 53.380 kb on + strand, within LU632_RS00265 at 53.380 kb on + strand, within LU632_RS00265 at 53.381 kb on - strand, within LU632_RS00265 at 53.469 kb on + strand, within LU632_RS00265 at 53.469 kb on + strand, within LU632_RS00265 at 53.541 kb on + strand, within LU632_RS00265 at 53.542 kb on - strand, within LU632_RS00265 at 53.599 kb on - strand, within LU632_RS00265 at 53.684 kb on - strand, within LU632_RS00265 at 53.724 kb on + strand, within LU632_RS00265 at 53.738 kb on - strand, within LU632_RS00265 at 53.740 kb on - strand, within LU632_RS00265 at 53.764 kb on + strand, within LU632_RS00265 at 53.821 kb on - strand, within LU632_RS00265 at 53.858 kb on - strand, within LU632_RS00265 at 53.858 kb on - strand, within LU632_RS00265 at 53.858 kb on - strand, within LU632_RS00265 at 53.877 kb on + strand, within LU632_RS00265 at 53.938 kb on + strand, within LU632_RS00265 at 54.079 kb on + strand, within LU632_RS00265 at 54.079 kb on + strand, within LU632_RS00265 at 54.094 kb on + strand, within LU632_RS00265 at 54.095 kb on - strand, within LU632_RS00265 at 54.160 kb on + strand at 54.161 kb on - strand at 54.161 kb on - strand at 54.161 kb on - strand at 54.163 kb on + strand at 54.163 kb on + strand at 54.164 kb on - strand at 54.164 kb on - strand at 54.207 kb on - strand at 54.279 kb on + strand at 54.279 kb on + strand at 54.306 kb on + strand at 54.314 kb on - strand at 54.479 kb on + strand at 54.480 kb on - strand at 54.527 kb on + strand at 54.527 kb on + strand at 54.541 kb on + strand at 54.542 kb on - strand at 54.576 kb on - strand at 54.582 kb on - strand at 54.589 kb on + strand at 54.589 kb on + strand at 54.611 kb on + strand at 54.723 kb on + strand, within dppB at 54.724 kb on - strand, within dppB at 54.724 kb on - strand, within dppB at 54.724 kb on - strand, within dppB at 54.725 kb on + strand, within dppB at 54.725 kb on + strand, within dppB at 54.725 kb on + strand, within dppB at 54.725 kb on + strand, within dppB at 54.726 kb on - strand, within dppB at 54.726 kb on - strand, within dppB at 54.764 kb on + strand, within dppB at 54.765 kb on - strand, within dppB at 54.816 kb on - strand, within dppB at 54.932 kb on + strand, within dppB at 54.987 kb on - strand, within dppB at 54.987 kb on - strand, within dppB at 55.046 kb on - strand, within dppB at 55.092 kb on - strand, within dppB at 55.233 kb on + strand, within dppB at 55.234 kb on - strand, within dppB at 55.234 kb on - strand, within dppB at 55.234 kb on - strand, within dppB at 55.235 kb on + strand, within dppB at 55.236 kb on - strand, within dppB at 55.236 kb on - strand, within dppB at 55.298 kb on + strand, within dppB at 55.298 kb on + strand, within dppB
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 51,762 + +2.0 51,762 + -0.1 51,762 + -0.4 51,762 + +1.1 51,815 - LU632_RS00260 0.19 +0.2 51,864 + LU632_RS00260 0.34 +1.2 51,869 + LU632_RS00260 0.35 +1.2 51,869 + LU632_RS00260 0.35 -0.3 51,870 - LU632_RS00260 0.35 -0.1 51,870 - LU632_RS00260 0.35 +1.4 51,871 + LU632_RS00260 0.36 -1.1 51,871 + LU632_RS00260 0.36 -2.4 51,872 - LU632_RS00260 0.36 +0.2 51,872 - LU632_RS00260 0.36 +0.4 51,929 + LU632_RS00260 0.53 -1.2 51,934 + LU632_RS00260 0.54 +0.1 51,935 - LU632_RS00260 0.54 -0.5 51,935 - LU632_RS00260 0.54 -0.4 51,935 - LU632_RS00260 0.54 -0.6 52,056 + +0.6 52,063 - -1.5 52,162 - +0.7 52,162 - -0.5 52,495 + +0.5 52,603 + +0.6 52,646 + -0.8 52,710 + +2.9 52,736 + -0.0 52,788 + +0.1 52,789 - -0.8 52,801 + -0.8 52,861 + +0.8 52,862 - -0.1 52,886 - LU632_RS00265 0.11 -1.4 52,975 + LU632_RS00265 0.17 -0.2 53,060 + LU632_RS00265 0.22 +0.2 53,061 - LU632_RS00265 0.22 +0.1 53,061 - LU632_RS00265 0.22 +0.1 53,098 + LU632_RS00265 0.24 -1.2 53,099 - LU632_RS00265 0.24 -1.3 53,099 - LU632_RS00265 0.24 +0.5 53,128 + LU632_RS00265 0.26 -1.4 53,129 - LU632_RS00265 0.26 +1.4 53,129 - LU632_RS00265 0.26 -0.3 53,188 - LU632_RS00265 0.30 -1.6 53,188 - LU632_RS00265 0.30 +0.2 53,256 + LU632_RS00265 0.34 -0.1 53,256 + LU632_RS00265 0.34 +0.3 53,258 + LU632_RS00265 0.34 -0.6 53,259 - LU632_RS00265 0.34 -0.7 53,380 + LU632_RS00265 0.42 +0.2 53,380 + LU632_RS00265 0.42 +0.3 53,381 - LU632_RS00265 0.42 +0.1 53,469 + LU632_RS00265 0.47 -0.4 53,469 + LU632_RS00265 0.47 -1.8 53,541 + LU632_RS00265 0.52 -0.9 53,542 - LU632_RS00265 0.52 +4.2 53,599 - LU632_RS00265 0.55 -1.5 53,684 - LU632_RS00265 0.61 -0.4 53,724 + LU632_RS00265 0.63 -2.1 53,738 - LU632_RS00265 0.64 -1.1 53,740 - LU632_RS00265 0.64 +0.2 53,764 + LU632_RS00265 0.66 -0.1 53,821 - LU632_RS00265 0.69 +0.9 53,858 - LU632_RS00265 0.72 -1.2 53,858 - LU632_RS00265 0.72 +0.1 53,858 - LU632_RS00265 0.72 +0.9 53,877 + LU632_RS00265 0.73 -1.0 53,938 + LU632_RS00265 0.77 -0.5 54,079 + LU632_RS00265 0.85 +1.1 54,079 + LU632_RS00265 0.85 -0.4 54,094 + LU632_RS00265 0.86 -0.9 54,095 - LU632_RS00265 0.86 +0.4 54,160 + +6.6 54,161 - +0.6 54,161 - -1.4 54,161 - -1.3 54,163 + -0.1 54,163 + -0.4 54,164 - +0.1 54,164 - +0.2 54,207 - -0.4 54,279 + -0.6 54,279 + +1.2 54,306 + -0.3 54,314 - +0.0 54,479 + -0.2 54,480 - +0.3 54,527 + +0.6 54,527 + -0.3 54,541 + -0.1 54,542 - -1.4 54,576 - -2.2 54,582 - +1.1 54,589 + +1.2 54,589 + -0.7 54,611 + -1.3 54,723 + dppB LU632_RS00270 0.19 +0.4 54,724 - dppB LU632_RS00270 0.19 +0.1 54,724 - dppB LU632_RS00270 0.19 +0.1 54,724 - dppB LU632_RS00270 0.19 +0.2 54,725 + dppB LU632_RS00270 0.19 -0.2 54,725 + dppB LU632_RS00270 0.19 +0.6 54,725 + dppB LU632_RS00270 0.19 +0.6 54,725 + dppB LU632_RS00270 0.19 -0.7 54,726 - dppB LU632_RS00270 0.19 +1.5 54,726 - dppB LU632_RS00270 0.19 +1.1 54,764 + dppB LU632_RS00270 0.23 -0.8 54,765 - dppB LU632_RS00270 0.23 -1.1 54,816 - dppB LU632_RS00270 0.28 +0.9 54,932 + dppB LU632_RS00270 0.40 +0.1 54,987 - dppB LU632_RS00270 0.45 -0.4 54,987 - dppB LU632_RS00270 0.45 +0.3 55,046 - dppB LU632_RS00270 0.51 +2.6 55,092 - dppB LU632_RS00270 0.55 +0.2 55,233 + dppB LU632_RS00270 0.69 +1.1 55,234 - dppB LU632_RS00270 0.69 -2.6 55,234 - dppB LU632_RS00270 0.69 +1.3 55,234 - dppB LU632_RS00270 0.69 -0.3 55,235 + dppB LU632_RS00270 0.69 +0.9 55,236 - dppB LU632_RS00270 0.69 -0.4 55,236 - dppB LU632_RS00270 0.69 -0.8 55,298 + dppB LU632_RS00270 0.75 +0.6 55,298 + dppB LU632_RS00270 0.75 -0.1
Or see this region's nucleotide sequence