Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00260

Experiment: plant=Squash; plant sample=QP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00255 and LU632_RS00260 are separated by 581 nucleotidesLU632_RS00260 and LU632_RS00265 are separated by 615 nucleotides LU632_RS00255: LU632_RS00255 - ABC transporter substrate-binding protein, at 50,017 to 51,168 _RS00255 LU632_RS00260: LU632_RS00260 - SMR family transporter, at 51,750 to 52,089 _RS00260 LU632_RS00265: LU632_RS00265 - ABC transporter substrate-binding protein, at 52,705 to 54,315 _RS00265 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1 2 3at 50.771 kb on - strand, within LU632_RS00255at 50.771 kb on - strand, within LU632_RS00255at 50.864 kb on - strand, within LU632_RS00255at 50.981 kb on + strand, within LU632_RS00255at 51.009 kb on + strand, within LU632_RS00255at 51.019 kb on - strand, within LU632_RS00255at 51.085 kb on + strandat 51.086 kb on - strandat 51.098 kb on - strandat 51.213 kb on - strandat 51.258 kb on + strandat 51.259 kb on - strandat 51.345 kb on - strandat 51.348 kb on + strandat 51.355 kb on + strandat 51.398 kb on + strandat 51.399 kb on - strandat 51.416 kb on - strandat 51.459 kb on + strandat 51.595 kb on + strandat 51.653 kb on + strandat 51.687 kb on + strandat 51.702 kb on - strandat 51.762 kb on + strandat 51.762 kb on + strandat 51.762 kb on + strandat 51.762 kb on + strandat 51.815 kb on - strand, within LU632_RS00260at 51.864 kb on + strand, within LU632_RS00260at 51.869 kb on + strand, within LU632_RS00260at 51.869 kb on + strand, within LU632_RS00260at 51.870 kb on - strand, within LU632_RS00260at 51.870 kb on - strand, within LU632_RS00260at 51.871 kb on + strand, within LU632_RS00260at 51.871 kb on + strand, within LU632_RS00260at 51.872 kb on - strand, within LU632_RS00260at 51.872 kb on - strand, within LU632_RS00260at 51.929 kb on + strand, within LU632_RS00260at 51.934 kb on + strand, within LU632_RS00260at 51.935 kb on - strand, within LU632_RS00260at 51.935 kb on - strand, within LU632_RS00260at 51.935 kb on - strand, within LU632_RS00260at 52.056 kb on + strandat 52.063 kb on - strandat 52.162 kb on - strandat 52.162 kb on - strandat 52.495 kb on + strandat 52.603 kb on + strandat 52.646 kb on + strandat 52.710 kb on + strandat 52.736 kb on + strandat 52.788 kb on + strandat 52.789 kb on - strandat 52.801 kb on + strandat 52.861 kb on + strandat 52.862 kb on - strandat 52.886 kb on - strand, within LU632_RS00265at 52.975 kb on + strand, within LU632_RS00265at 53.060 kb on + strand, within LU632_RS00265at 53.061 kb on - strand, within LU632_RS00265at 53.061 kb on - strand, within LU632_RS00265

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA
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50,771 - LU632_RS00255 0.65 -0.3
50,771 - LU632_RS00255 0.65 +1.0
50,864 - LU632_RS00255 0.74 +2.9
50,981 + LU632_RS00255 0.84 -2.2
51,009 + LU632_RS00255 0.86 +0.5
51,019 - LU632_RS00255 0.87 +1.6
51,085 + -0.1
51,086 - -1.4
51,098 - -1.4
51,213 - +1.2
51,258 + +1.9
51,259 - +0.9
51,345 - +0.4
51,348 + +0.6
51,355 + +1.0
51,398 + -0.1
51,399 - +0.1
51,416 - -0.7
51,459 + +0.2
51,595 + +0.8
51,653 + -1.2
51,687 + -0.2
51,702 - +0.9
51,762 + +2.0
51,762 + -0.1
51,762 + -0.4
51,762 + +1.1
51,815 - LU632_RS00260 0.19 +0.2
51,864 + LU632_RS00260 0.34 +1.2
51,869 + LU632_RS00260 0.35 +1.2
51,869 + LU632_RS00260 0.35 -0.3
51,870 - LU632_RS00260 0.35 -0.1
51,870 - LU632_RS00260 0.35 +1.4
51,871 + LU632_RS00260 0.36 -1.1
51,871 + LU632_RS00260 0.36 -2.4
51,872 - LU632_RS00260 0.36 +0.2
51,872 - LU632_RS00260 0.36 +0.4
51,929 + LU632_RS00260 0.53 -1.2
51,934 + LU632_RS00260 0.54 +0.1
51,935 - LU632_RS00260 0.54 -0.5
51,935 - LU632_RS00260 0.54 -0.4
51,935 - LU632_RS00260 0.54 -0.6
52,056 + +0.6
52,063 - -1.5
52,162 - +0.7
52,162 - -0.5
52,495 + +0.5
52,603 + +0.6
52,646 + -0.8
52,710 + +2.9
52,736 + -0.0
52,788 + +0.1
52,789 - -0.8
52,801 + -0.8
52,861 + +0.8
52,862 - -0.1
52,886 - LU632_RS00265 0.11 -1.4
52,975 + LU632_RS00265 0.17 -0.2
53,060 + LU632_RS00265 0.22 +0.2
53,061 - LU632_RS00265 0.22 +0.1
53,061 - LU632_RS00265 0.22 +0.1

Or see this region's nucleotide sequence