Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26085 and LU632_RS26090 are separated by 62 nucleotides LU632_RS26090 and LU632_RS26095 overlap by 4 nucleotides LU632_RS26095 and LU632_RS26100 are separated by 7 nucleotides LU632_RS26100 and LU632_RS26105 are separated by 16 nucleotides
LU632_RS26085: LU632_RS26085 - site-specific DNA-methyltransferase, at 23,785 to 25,029
_RS26085
LU632_RS26090: LU632_RS26090 - DUF2514 domain-containing protein, at 25,092 to 25,613
_RS26090
LU632_RS26095: LU632_RS26095 - lysozyme, at 25,610 to 26,035
_RS26095
LU632_RS26100: LU632_RS26100 - phage holin family protein, at 26,043 to 26,345
_RS26100
LU632_RS26105: LU632_RS26105 - hypothetical protein, at 26,362 to 26,520
_RS26105
Position (kb) 25
26 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 24.150 kb on - strand, within LU632_RS26085 at 24.177 kb on - strand, within LU632_RS26085 at 24.177 kb on - strand, within LU632_RS26085 at 24.215 kb on - strand, within LU632_RS26085 at 24.215 kb on - strand, within LU632_RS26085 at 24.270 kb on - strand, within LU632_RS26085 at 24.294 kb on + strand, within LU632_RS26085 at 24.295 kb on - strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.296 kb on + strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.297 kb on - strand, within LU632_RS26085 at 24.338 kb on + strand, within LU632_RS26085 at 24.338 kb on + strand, within LU632_RS26085 at 24.338 kb on + strand, within LU632_RS26085 at 24.338 kb on + strand, within LU632_RS26085 at 24.339 kb on - strand, within LU632_RS26085 at 24.339 kb on - strand, within LU632_RS26085 at 24.339 kb on - strand, within LU632_RS26085 at 24.394 kb on - strand, within LU632_RS26085 at 24.415 kb on - strand, within LU632_RS26085 at 24.415 kb on - strand, within LU632_RS26085 at 24.434 kb on + strand, within LU632_RS26085 at 24.434 kb on + strand, within LU632_RS26085 at 24.435 kb on - strand, within LU632_RS26085 at 24.456 kb on + strand, within LU632_RS26085 at 24.456 kb on + strand, within LU632_RS26085 at 24.456 kb on + strand, within LU632_RS26085 at 24.456 kb on + strand, within LU632_RS26085 at 24.456 kb on + strand, within LU632_RS26085 at 24.456 kb on + strand, within LU632_RS26085 at 24.456 kb on + strand, within LU632_RS26085 at 24.457 kb on - strand, within LU632_RS26085 at 24.457 kb on - strand, within LU632_RS26085 at 24.457 kb on - strand, within LU632_RS26085 at 24.457 kb on - strand, within LU632_RS26085 at 24.457 kb on - strand, within LU632_RS26085 at 24.546 kb on + strand, within LU632_RS26085 at 24.718 kb on - strand, within LU632_RS26085 at 24.753 kb on + strand, within LU632_RS26085 at 24.753 kb on + strand, within LU632_RS26085 at 24.754 kb on - strand, within LU632_RS26085 at 24.754 kb on - strand, within LU632_RS26085 at 24.767 kb on + strand, within LU632_RS26085 at 24.767 kb on + strand, within LU632_RS26085 at 24.767 kb on + strand, within LU632_RS26085 at 24.767 kb on + strand, within LU632_RS26085 at 24.767 kb on + strand, within LU632_RS26085 at 24.768 kb on - strand, within LU632_RS26085 at 25.005 kb on - strand at 25.080 kb on + strand at 25.363 kb on - strand, within LU632_RS26090 at 25.508 kb on + strand, within LU632_RS26090 at 25.508 kb on + strand, within LU632_RS26090 at 25.508 kb on + strand, within LU632_RS26090 at 25.509 kb on - strand, within LU632_RS26090 at 25.509 kb on - strand, within LU632_RS26090 at 25.509 kb on - strand, within LU632_RS26090 at 25.509 kb on - strand, within LU632_RS26090 at 25.509 kb on - strand, within LU632_RS26090 at 25.523 kb on + strand, within LU632_RS26090 at 25.523 kb on + strand, within LU632_RS26090 at 25.616 kb on + strand at 25.617 kb on - strand at 25.625 kb on - strand at 25.716 kb on + strand, within LU632_RS26095 at 25.716 kb on + strand, within LU632_RS26095 at 25.717 kb on - strand, within LU632_RS26095 at 25.747 kb on + strand, within LU632_RS26095 at 25.748 kb on - strand, within LU632_RS26095 at 25.748 kb on - strand, within LU632_RS26095 at 25.748 kb on - strand, within LU632_RS26095 at 25.748 kb on - strand, within LU632_RS26095 at 25.762 kb on + strand, within LU632_RS26095 at 25.839 kb on + strand, within LU632_RS26095 at 25.900 kb on + strand, within LU632_RS26095 at 25.901 kb on - strand, within LU632_RS26095 at 25.901 kb on - strand, within LU632_RS26095 at 25.903 kb on + strand, within LU632_RS26095 at 25.903 kb on + strand, within LU632_RS26095 at 25.903 kb on + strand, within LU632_RS26095 at 25.904 kb on - strand, within LU632_RS26095 at 25.904 kb on - strand, within LU632_RS26095 at 25.904 kb on - strand, within LU632_RS26095 at 25.904 kb on - strand, within LU632_RS26095 at 25.920 kb on - strand, within LU632_RS26095 at 25.971 kb on + strand, within LU632_RS26095 at 25.972 kb on - strand, within LU632_RS26095 at 25.972 kb on - strand, within LU632_RS26095 at 26.044 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.097 kb on - strand, within LU632_RS26100 at 26.097 kb on - strand, within LU632_RS26100 at 26.308 kb on - strand, within LU632_RS26100 at 26.367 kb on + strand at 26.367 kb on + strand at 26.525 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 24,150 - LU632_RS26085 0.29 +0.0 24,177 - LU632_RS26085 0.31 -3.8 24,177 - LU632_RS26085 0.31 -0.1 24,215 - LU632_RS26085 0.35 +3.2 24,215 - LU632_RS26085 0.35 -1.1 24,270 - LU632_RS26085 0.39 -1.4 24,294 + LU632_RS26085 0.41 +0.6 24,295 - LU632_RS26085 0.41 -0.2 24,296 + LU632_RS26085 0.41 +1.2 24,296 + LU632_RS26085 0.41 +0.5 24,296 + LU632_RS26085 0.41 +0.4 24,296 + LU632_RS26085 0.41 -1.0 24,296 + LU632_RS26085 0.41 +0.4 24,296 + LU632_RS26085 0.41 +0.8 24,296 + LU632_RS26085 0.41 -1.6 24,296 + LU632_RS26085 0.41 +0.9 24,296 + LU632_RS26085 0.41 -3.2 24,296 + LU632_RS26085 0.41 +1.1 24,297 - LU632_RS26085 0.41 -2.3 24,297 - LU632_RS26085 0.41 +0.2 24,297 - LU632_RS26085 0.41 +0.0 24,297 - LU632_RS26085 0.41 -2.3 24,297 - LU632_RS26085 0.41 +0.7 24,297 - LU632_RS26085 0.41 -2.2 24,297 - LU632_RS26085 0.41 +1.2 24,297 - LU632_RS26085 0.41 -0.4 24,297 - LU632_RS26085 0.41 -1.3 24,297 - LU632_RS26085 0.41 -3.5 24,338 + LU632_RS26085 0.44 +0.8 24,338 + LU632_RS26085 0.44 -2.4 24,338 + LU632_RS26085 0.44 -4.0 24,338 + LU632_RS26085 0.44 +3.8 24,339 - LU632_RS26085 0.44 -3.9 24,339 - LU632_RS26085 0.44 -0.7 24,339 - LU632_RS26085 0.44 +1.0 24,394 - LU632_RS26085 0.49 -1.9 24,415 - LU632_RS26085 0.51 -0.5 24,415 - LU632_RS26085 0.51 +0.5 24,434 + LU632_RS26085 0.52 +1.0 24,434 + LU632_RS26085 0.52 -3.0 24,435 - LU632_RS26085 0.52 -0.3 24,456 + LU632_RS26085 0.54 +0.9 24,456 + LU632_RS26085 0.54 +1.3 24,456 + LU632_RS26085 0.54 +1.3 24,456 + LU632_RS26085 0.54 +0.5 24,456 + LU632_RS26085 0.54 -1.8 24,456 + LU632_RS26085 0.54 +1.9 24,456 + LU632_RS26085 0.54 +0.8 24,457 - LU632_RS26085 0.54 -1.0 24,457 - LU632_RS26085 0.54 -0.0 24,457 - LU632_RS26085 0.54 -0.2 24,457 - LU632_RS26085 0.54 +0.0 24,457 - LU632_RS26085 0.54 -3.6 24,546 + LU632_RS26085 0.61 +0.8 24,718 - LU632_RS26085 0.75 -1.4 24,753 + LU632_RS26085 0.78 -2.5 24,753 + LU632_RS26085 0.78 -0.2 24,754 - LU632_RS26085 0.78 +0.2 24,754 - LU632_RS26085 0.78 +0.3 24,767 + LU632_RS26085 0.79 -1.3 24,767 + LU632_RS26085 0.79 +2.1 24,767 + LU632_RS26085 0.79 +1.7 24,767 + LU632_RS26085 0.79 +1.3 24,767 + LU632_RS26085 0.79 +1.5 24,768 - LU632_RS26085 0.79 -1.6 25,005 - +0.2 25,080 + +2.3 25,363 - LU632_RS26090 0.52 -1.6 25,508 + LU632_RS26090 0.80 -4.2 25,508 + LU632_RS26090 0.80 -1.3 25,508 + LU632_RS26090 0.80 +2.6 25,509 - LU632_RS26090 0.80 +0.9 25,509 - LU632_RS26090 0.80 +0.6 25,509 - LU632_RS26090 0.80 -3.0 25,509 - LU632_RS26090 0.80 -2.7 25,509 - LU632_RS26090 0.80 -2.2 25,523 + LU632_RS26090 0.83 -1.1 25,523 + LU632_RS26090 0.83 -1.0 25,616 + +0.0 25,617 - -0.1 25,625 - +0.7 25,716 + LU632_RS26095 0.25 -0.1 25,716 + LU632_RS26095 0.25 +0.7 25,717 - LU632_RS26095 0.25 +0.4 25,747 + LU632_RS26095 0.32 -0.9 25,748 - LU632_RS26095 0.32 -0.5 25,748 - LU632_RS26095 0.32 -1.5 25,748 - LU632_RS26095 0.32 -0.9 25,748 - LU632_RS26095 0.32 +0.7 25,762 + LU632_RS26095 0.36 +0.4 25,839 + LU632_RS26095 0.54 -0.5 25,900 + LU632_RS26095 0.68 +0.2 25,901 - LU632_RS26095 0.68 -0.8 25,901 - LU632_RS26095 0.68 +0.8 25,903 + LU632_RS26095 0.69 -0.4 25,903 + LU632_RS26095 0.69 -2.4 25,903 + LU632_RS26095 0.69 -1.3 25,904 - LU632_RS26095 0.69 -0.9 25,904 - LU632_RS26095 0.69 -0.6 25,904 - LU632_RS26095 0.69 +0.1 25,904 - LU632_RS26095 0.69 +0.5 25,920 - LU632_RS26095 0.73 -0.4 25,971 + LU632_RS26095 0.85 -2.2 25,972 - LU632_RS26095 0.85 -2.6 25,972 - LU632_RS26095 0.85 -0.2 26,044 + -1.6 26,048 + +0.0 26,048 + -2.9 26,048 + -0.8 26,048 + +0.0 26,048 + -0.3 26,048 + -2.0 26,048 + -1.1 26,049 - +0.9 26,049 - +0.2 26,049 - +0.8 26,049 - +0.2 26,049 - -3.2 26,049 - -0.3 26,049 - +1.6 26,049 - -0.5 26,049 - +0.6 26,097 - LU632_RS26100 0.18 -0.4 26,097 - LU632_RS26100 0.18 -0.5 26,308 - LU632_RS26100 0.87 +0.4 26,367 + +1.8 26,367 + +1.7 26,525 + +1.3
Or see this region's nucleotide sequence