Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26030 and LU632_RS26035 are separated by 17 nucleotides LU632_RS26035 and LU632_RS26040 are separated by 12 nucleotides LU632_RS26040 and LU632_RS26045 are separated by 18 nucleotides LU632_RS26045 and LU632_RS26050 overlap by 56 nucleotides
LU632_RS26030: LU632_RS26030 - DUF2184 domain-containing protein, at 14,304 to 15,260
_RS26030
LU632_RS26035: LU632_RS26035 - hypothetical protein, at 15,278 to 15,760
_RS26035
LU632_RS26040: LU632_RS26040 - DUF2213 domain-containing protein, at 15,773 to 17,047
_RS26040
LU632_RS26045: LU632_RS26045 - phage head morphogenesis protein, at 17,066 to 17,827
_RS26045
LU632_RS26050: LU632_RS26050 - DUF1073 domain-containing protein, at 17,772 to 19,157
_RS26050
Position (kb) 15
16
17
18 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 14.820 kb on - strand, within LU632_RS26030 at 14.842 kb on + strand, within LU632_RS26030 at 14.842 kb on + strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.869 kb on + strand, within LU632_RS26030 at 14.870 kb on - strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.891 kb on - strand, within LU632_RS26030 at 14.905 kb on - strand, within LU632_RS26030 at 14.944 kb on - strand, within LU632_RS26030 at 15.000 kb on - strand, within LU632_RS26030 at 15.035 kb on + strand, within LU632_RS26030 at 15.036 kb on - strand, within LU632_RS26030 at 15.096 kb on - strand, within LU632_RS26030 at 15.105 kb on + strand, within LU632_RS26030 at 15.106 kb on - strand, within LU632_RS26030 at 15.106 kb on - strand, within LU632_RS26030 at 15.119 kb on + strand, within LU632_RS26030 at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.181 kb on - strand at 15.181 kb on - strand at 15.181 kb on - strand at 15.202 kb on - strand at 15.279 kb on + strand at 15.279 kb on + strand at 15.280 kb on - strand at 15.280 kb on - strand at 15.288 kb on + strand at 15.328 kb on + strand, within LU632_RS26035 at 15.328 kb on + strand, within LU632_RS26035 at 15.329 kb on - strand, within LU632_RS26035 at 15.398 kb on - strand, within LU632_RS26035 at 15.416 kb on + strand, within LU632_RS26035 at 15.426 kb on + strand, within LU632_RS26035 at 15.426 kb on + strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.475 kb on + strand, within LU632_RS26035 at 15.476 kb on - strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.573 kb on + strand, within LU632_RS26035 at 15.573 kb on + strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.645 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.712 kb on + strand at 15.712 kb on + strand at 15.712 kb on + strand at 15.712 kb on + strand at 15.713 kb on - strand at 15.713 kb on - strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.762 kb on - strand at 15.762 kb on - strand at 15.817 kb on + strand at 15.899 kb on + strand at 15.900 kb on - strand at 16.017 kb on + strand, within LU632_RS26040 at 16.072 kb on + strand, within LU632_RS26040 at 16.072 kb on + strand, within LU632_RS26040 at 16.109 kb on + strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.153 kb on - strand, within LU632_RS26040 at 16.230 kb on - strand, within LU632_RS26040 at 16.249 kb on + strand, within LU632_RS26040 at 16.400 kb on - strand, within LU632_RS26040 at 16.471 kb on + strand, within LU632_RS26040 at 16.472 kb on - strand, within LU632_RS26040 at 16.472 kb on - strand, within LU632_RS26040 at 16.484 kb on + strand, within LU632_RS26040 at 16.526 kb on + strand, within LU632_RS26040 at 16.576 kb on + strand, within LU632_RS26040 at 16.577 kb on - strand, within LU632_RS26040 at 16.585 kb on + strand, within LU632_RS26040 at 16.585 kb on + strand, within LU632_RS26040 at 16.585 kb on + strand, within LU632_RS26040 at 16.585 kb on + strand, within LU632_RS26040 at 16.585 kb on + strand, within LU632_RS26040 at 16.623 kb on + strand, within LU632_RS26040 at 16.711 kb on + strand, within LU632_RS26040 at 16.711 kb on + strand, within LU632_RS26040 at 16.712 kb on - strand, within LU632_RS26040 at 16.712 kb on - strand, within LU632_RS26040 at 16.825 kb on + strand, within LU632_RS26040 at 16.825 kb on + strand, within LU632_RS26040 at 16.849 kb on + strand, within LU632_RS26040 at 16.941 kb on + strand at 17.005 kb on + strand at 17.037 kb on + strand at 17.037 kb on + strand at 17.037 kb on + strand at 17.038 kb on - strand at 17.040 kb on + strand at 17.040 kb on + strand at 17.067 kb on + strand at 17.067 kb on + strand at 17.067 kb on + strand at 17.067 kb on + strand at 17.067 kb on + strand at 17.067 kb on + strand at 17.068 kb on - strand at 17.068 kb on - strand at 17.068 kb on - strand at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.228 kb on - strand, within LU632_RS26045 at 17.228 kb on - strand, within LU632_RS26045 at 17.229 kb on + strand, within LU632_RS26045 at 17.229 kb on + strand, within LU632_RS26045 at 17.229 kb on + strand, within LU632_RS26045 at 17.229 kb on + strand, within LU632_RS26045 at 17.230 kb on - strand, within LU632_RS26045 at 17.230 kb on - strand, within LU632_RS26045 at 17.230 kb on - strand, within LU632_RS26045 at 17.296 kb on + strand, within LU632_RS26045 at 17.297 kb on - strand, within LU632_RS26045 at 17.297 kb on - strand, within LU632_RS26045 at 17.305 kb on + strand, within LU632_RS26045 at 17.305 kb on + strand, within LU632_RS26045 at 17.306 kb on - strand, within LU632_RS26045 at 17.311 kb on + strand, within LU632_RS26045 at 17.311 kb on + strand, within LU632_RS26045 at 17.311 kb on + strand, within LU632_RS26045 at 17.327 kb on + strand, within LU632_RS26045 at 17.345 kb on + strand, within LU632_RS26045 at 17.346 kb on - strand, within LU632_RS26045 at 17.385 kb on - strand, within LU632_RS26045 at 17.408 kb on + strand, within LU632_RS26045 at 17.409 kb on - strand, within LU632_RS26045 at 17.495 kb on - strand, within LU632_RS26045 at 17.495 kb on - strand, within LU632_RS26045 at 17.495 kb on - strand, within LU632_RS26045 at 17.540 kb on - strand, within LU632_RS26045 at 17.557 kb on + strand, within LU632_RS26045 at 17.558 kb on - strand, within LU632_RS26045 at 17.558 kb on - strand, within LU632_RS26045 at 17.614 kb on + strand, within LU632_RS26045 at 17.615 kb on - strand, within LU632_RS26045 at 17.615 kb on - strand, within LU632_RS26045 at 17.615 kb on - strand, within LU632_RS26045 at 17.615 kb on - strand, within LU632_RS26045 at 17.618 kb on + strand, within LU632_RS26045 at 17.618 kb on + strand, within LU632_RS26045 at 17.618 kb on + strand, within LU632_RS26045 at 17.618 kb on + strand, within LU632_RS26045 at 17.619 kb on - strand, within LU632_RS26045 at 17.619 kb on - strand, within LU632_RS26045 at 17.619 kb on - strand, within LU632_RS26045 at 17.628 kb on + strand, within LU632_RS26045 at 17.629 kb on - strand, within LU632_RS26045 at 17.629 kb on - strand, within LU632_RS26045 at 17.629 kb on - strand, within LU632_RS26045 at 17.629 kb on - strand, within LU632_RS26045 at 17.629 kb on - strand, within LU632_RS26045 at 17.629 kb on - strand, within LU632_RS26045 at 17.629 kb on - strand, within LU632_RS26045 at 17.648 kb on + strand, within LU632_RS26045 at 17.648 kb on + strand, within LU632_RS26045 at 17.693 kb on - strand, within LU632_RS26045 at 17.695 kb on + strand, within LU632_RS26045 at 17.695 kb on + strand, within LU632_RS26045 at 17.695 kb on + strand, within LU632_RS26045 at 17.696 kb on - strand, within LU632_RS26045 at 17.696 kb on - strand, within LU632_RS26045 at 17.696 kb on - strand, within LU632_RS26045 at 17.696 kb on - strand, within LU632_RS26045 at 17.696 kb on - strand, within LU632_RS26045 at 17.736 kb on + strand, within LU632_RS26045 at 17.737 kb on - strand, within LU632_RS26045 at 17.773 kb on + strand at 17.773 kb on + strand at 17.774 kb on - strand at 17.844 kb on - strand at 17.844 kb on - strand at 17.882 kb on + strand at 17.882 kb on + strand at 17.938 kb on + strand, within LU632_RS26050 at 17.938 kb on + strand, within LU632_RS26050 at 17.938 kb on + strand, within LU632_RS26050 at 17.938 kb on + strand, within LU632_RS26050 at 17.939 kb on - strand, within LU632_RS26050 at 17.961 kb on + strand, within LU632_RS26050 at 18.014 kb on + strand, within LU632_RS26050 at 18.014 kb on + strand, within LU632_RS26050 at 18.014 kb on + strand, within LU632_RS26050
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 14,820 - LU632_RS26030 0.54 -0.5 14,842 + LU632_RS26030 0.56 +0.5 14,842 + LU632_RS26030 0.56 -1.0 14,843 - LU632_RS26030 0.56 +0.8 14,843 - LU632_RS26030 0.56 -3.5 14,843 - LU632_RS26030 0.56 +1.6 14,843 - LU632_RS26030 0.56 +0.4 14,869 + LU632_RS26030 0.59 +1.3 14,870 - LU632_RS26030 0.59 -1.0 14,890 + LU632_RS26030 0.61 -2.0 14,890 + LU632_RS26030 0.61 -0.1 14,890 + LU632_RS26030 0.61 +1.3 14,891 - LU632_RS26030 0.61 +1.9 14,905 - LU632_RS26030 0.63 +0.7 14,944 - LU632_RS26030 0.67 +0.9 15,000 - LU632_RS26030 0.73 -0.4 15,035 + LU632_RS26030 0.76 -1.6 15,036 - LU632_RS26030 0.76 -3.0 15,096 - LU632_RS26030 0.83 -0.2 15,105 + LU632_RS26030 0.84 -1.6 15,106 - LU632_RS26030 0.84 +0.2 15,106 - LU632_RS26030 0.84 -0.6 15,119 + LU632_RS26030 0.85 -0.8 15,180 + +1.1 15,180 + -0.5 15,180 + -0.2 15,180 + +1.4 15,180 + +0.2 15,181 - +0.2 15,181 - -0.2 15,181 - -2.0 15,202 - +0.8 15,279 + -2.3 15,279 + +0.3 15,280 - -2.3 15,280 - -1.6 15,288 + +0.3 15,328 + LU632_RS26035 0.10 -0.9 15,328 + LU632_RS26035 0.10 +1.1 15,329 - LU632_RS26035 0.11 +0.2 15,398 - LU632_RS26035 0.25 -0.4 15,416 + LU632_RS26035 0.29 +2.0 15,426 + LU632_RS26035 0.31 -0.7 15,426 + LU632_RS26035 0.31 -0.1 15,427 - LU632_RS26035 0.31 -0.2 15,427 - LU632_RS26035 0.31 -1.0 15,427 - LU632_RS26035 0.31 -0.8 15,475 + LU632_RS26035 0.41 -0.6 15,476 - LU632_RS26035 0.41 -3.2 15,491 + LU632_RS26035 0.44 -0.7 15,491 + LU632_RS26035 0.44 +0.6 15,491 + LU632_RS26035 0.44 -2.1 15,491 + LU632_RS26035 0.44 +0.7 15,491 + LU632_RS26035 0.44 +1.8 15,491 + LU632_RS26035 0.44 -0.9 15,492 - LU632_RS26035 0.44 -0.6 15,492 - LU632_RS26035 0.44 +0.5 15,492 - LU632_RS26035 0.44 +1.0 15,492 - LU632_RS26035 0.44 -0.5 15,492 - LU632_RS26035 0.44 -2.0 15,492 - LU632_RS26035 0.44 -1.7 15,573 + LU632_RS26035 0.61 +1.4 15,573 + LU632_RS26035 0.61 +1.7 15,574 - LU632_RS26035 0.61 -2.0 15,574 - LU632_RS26035 0.61 +0.0 15,574 - LU632_RS26035 0.61 -0.7 15,574 - LU632_RS26035 0.61 -2.2 15,574 - LU632_RS26035 0.61 -0.6 15,645 + LU632_RS26035 0.76 -1.0 15,661 + LU632_RS26035 0.79 +0.8 15,661 + LU632_RS26035 0.79 +3.2 15,661 + LU632_RS26035 0.79 -2.0 15,712 + +0.3 15,712 + +1.6 15,712 + -0.5 15,712 + -1.4 15,713 - -1.1 15,713 - +0.0 15,761 + +0.4 15,761 + -1.4 15,761 + +1.0 15,761 + -1.4 15,761 + +5.4 15,761 + -2.2 15,761 + +1.1 15,762 - -0.1 15,762 - +0.0 15,817 + +0.0 15,899 + -2.3 15,900 - -1.0 16,017 + LU632_RS26040 0.19 -1.0 16,072 + LU632_RS26040 0.23 -1.5 16,072 + LU632_RS26040 0.23 -1.6 16,109 + LU632_RS26040 0.26 +1.0 16,110 - LU632_RS26040 0.26 -1.6 16,110 - LU632_RS26040 0.26 -3.2 16,110 - LU632_RS26040 0.26 +0.5 16,110 - LU632_RS26040 0.26 -1.0 16,153 - LU632_RS26040 0.30 -2.6 16,230 - LU632_RS26040 0.36 -0.2 16,249 + LU632_RS26040 0.37 +0.8 16,400 - LU632_RS26040 0.49 +1.2 16,471 + LU632_RS26040 0.55 -0.1 16,472 - LU632_RS26040 0.55 -0.8 16,472 - LU632_RS26040 0.55 -0.3 16,484 + LU632_RS26040 0.56 -0.6 16,526 + LU632_RS26040 0.59 -2.3 16,576 + LU632_RS26040 0.63 +2.4 16,577 - LU632_RS26040 0.63 -0.7 16,585 + LU632_RS26040 0.64 -0.7 16,585 + LU632_RS26040 0.64 -1.3 16,585 + LU632_RS26040 0.64 -2.3 16,585 + LU632_RS26040 0.64 -0.4 16,585 + LU632_RS26040 0.64 +1.0 16,623 + LU632_RS26040 0.67 -0.6 16,711 + LU632_RS26040 0.74 -3.5 16,711 + LU632_RS26040 0.74 -1.5 16,712 - LU632_RS26040 0.74 -2.8 16,712 - LU632_RS26040 0.74 -1.2 16,825 + LU632_RS26040 0.83 -1.0 16,825 + LU632_RS26040 0.83 -3.5 16,849 + LU632_RS26040 0.84 +1.2 16,941 + +1.7 17,005 + +0.8 17,037 + -0.5 17,037 + -3.2 17,037 + -2.1 17,038 - -1.0 17,040 + +2.3 17,040 + +0.8 17,067 + +1.6 17,067 + -1.4 17,067 + -2.6 17,067 + -2.0 17,067 + -0.5 17,067 + -1.9 17,068 - +0.0 17,068 - +0.7 17,068 - -1.2 17,227 + LU632_RS26045 0.21 +3.9 17,227 + LU632_RS26045 0.21 +2.2 17,227 + LU632_RS26045 0.21 +0.1 17,227 + LU632_RS26045 0.21 +2.0 17,227 + LU632_RS26045 0.21 -0.9 17,227 + LU632_RS26045 0.21 +0.0 17,227 + LU632_RS26045 0.21 +0.8 17,227 + LU632_RS26045 0.21 +2.8 17,227 + LU632_RS26045 0.21 +0.5 17,227 + LU632_RS26045 0.21 -1.8 17,227 + LU632_RS26045 0.21 +1.1 17,228 - LU632_RS26045 0.21 -1.2 17,228 - LU632_RS26045 0.21 -0.1 17,229 + LU632_RS26045 0.21 +0.6 17,229 + LU632_RS26045 0.21 -2.0 17,229 + LU632_RS26045 0.21 +0.4 17,229 + LU632_RS26045 0.21 -1.3 17,230 - LU632_RS26045 0.22 -2.3 17,230 - LU632_RS26045 0.22 -3.3 17,230 - LU632_RS26045 0.22 -2.3 17,296 + LU632_RS26045 0.30 +1.4 17,297 - LU632_RS26045 0.30 -4.2 17,297 - LU632_RS26045 0.30 -2.8 17,305 + LU632_RS26045 0.31 +0.2 17,305 + LU632_RS26045 0.31 -1.2 17,306 - LU632_RS26045 0.31 +0.4 17,311 + LU632_RS26045 0.32 +0.3 17,311 + LU632_RS26045 0.32 -0.9 17,311 + LU632_RS26045 0.32 +1.5 17,327 + LU632_RS26045 0.34 +1.4 17,345 + LU632_RS26045 0.37 +0.5 17,346 - LU632_RS26045 0.37 -2.6 17,385 - LU632_RS26045 0.42 -2.7 17,408 + LU632_RS26045 0.45 -0.7 17,409 - LU632_RS26045 0.45 +1.1 17,495 - LU632_RS26045 0.56 -0.1 17,495 - LU632_RS26045 0.56 -2.1 17,495 - LU632_RS26045 0.56 +0.2 17,540 - LU632_RS26045 0.62 -3.0 17,557 + LU632_RS26045 0.64 -2.3 17,558 - LU632_RS26045 0.65 -2.1 17,558 - LU632_RS26045 0.65 +0.1 17,614 + LU632_RS26045 0.72 +1.1 17,615 - LU632_RS26045 0.72 -0.6 17,615 - LU632_RS26045 0.72 -0.2 17,615 - LU632_RS26045 0.72 -3.1 17,615 - LU632_RS26045 0.72 -3.6 17,618 + LU632_RS26045 0.72 -0.1 17,618 + LU632_RS26045 0.72 -0.4 17,618 + LU632_RS26045 0.72 +0.4 17,618 + LU632_RS26045 0.72 -2.1 17,619 - LU632_RS26045 0.73 +0.0 17,619 - LU632_RS26045 0.73 -1.1 17,619 - LU632_RS26045 0.73 -1.3 17,628 + LU632_RS26045 0.74 -2.7 17,629 - LU632_RS26045 0.74 -3.3 17,629 - LU632_RS26045 0.74 -2.5 17,629 - LU632_RS26045 0.74 -2.3 17,629 - LU632_RS26045 0.74 -2.8 17,629 - LU632_RS26045 0.74 -1.6 17,629 - LU632_RS26045 0.74 -1.3 17,629 - LU632_RS26045 0.74 +0.8 17,648 + LU632_RS26045 0.76 -0.3 17,648 + LU632_RS26045 0.76 +2.4 17,693 - LU632_RS26045 0.82 -1.8 17,695 + LU632_RS26045 0.83 +0.0 17,695 + LU632_RS26045 0.83 -1.6 17,695 + LU632_RS26045 0.83 -2.3 17,696 - LU632_RS26045 0.83 +0.8 17,696 - LU632_RS26045 0.83 +0.9 17,696 - LU632_RS26045 0.83 +0.9 17,696 - LU632_RS26045 0.83 -2.1 17,696 - LU632_RS26045 0.83 +1.0 17,736 + LU632_RS26045 0.88 -0.3 17,737 - LU632_RS26045 0.88 -1.2 17,773 + -0.0 17,773 + -3.3 17,774 - +0.3 17,844 - -0.3 17,844 - -1.1 17,882 + +1.2 17,882 + -0.4 17,938 + LU632_RS26050 0.12 +0.1 17,938 + LU632_RS26050 0.12 -0.6 17,938 + LU632_RS26050 0.12 -0.4 17,938 + LU632_RS26050 0.12 +0.1 17,939 - LU632_RS26050 0.12 -0.9 17,961 + LU632_RS26050 0.14 -0.5 18,014 + LU632_RS26050 0.17 +0.4 18,014 + LU632_RS26050 0.17 -1.0 18,014 + LU632_RS26050 0.17 -0.4
Or see this region's nucleotide sequence