Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26020 and LU632_RS26025 are separated by 9 nucleotides LU632_RS26025 and LU632_RS26030 are separated by 47 nucleotides LU632_RS26030 and LU632_RS26035 are separated by 17 nucleotides LU632_RS26035 and LU632_RS26040 are separated by 12 nucleotides
LU632_RS26015: LU632_RS26015 - hypothetical protein, at 12,776 to 13,306
_RS26015
LU632_RS26020: LU632_RS26020 - DUF4054 domain-containing protein, at 13,303 to 13,686
_RS26020
LU632_RS26025: LU632_RS26025 - hypothetical protein, at 13,696 to 14,256
_RS26025
LU632_RS26030: LU632_RS26030 - DUF2184 domain-containing protein, at 14,304 to 15,260
_RS26030
LU632_RS26035: LU632_RS26035 - hypothetical protein, at 15,278 to 15,760
_RS26035
LU632_RS26040: LU632_RS26040 - DUF2213 domain-containing protein, at 15,773 to 17,047
_RS26040
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 13.511 kb on + strand, within LU632_RS26020 at 14.296 kb on - strand at 14.309 kb on + strand at 14.309 kb on + strand at 14.310 kb on - strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.321 kb on - strand at 14.371 kb on + strand at 14.371 kb on + strand at 14.371 kb on + strand at 14.372 kb on - strand at 14.372 kb on - strand at 14.379 kb on + strand at 14.380 kb on - strand at 14.412 kb on - strand, within LU632_RS26030 at 14.456 kb on + strand, within LU632_RS26030 at 14.459 kb on + strand, within LU632_RS26030 at 14.460 kb on - strand, within LU632_RS26030 at 14.460 kb on - strand, within LU632_RS26030 at 14.461 kb on + strand, within LU632_RS26030 at 14.502 kb on - strand, within LU632_RS26030 at 14.510 kb on + strand, within LU632_RS26030 at 14.510 kb on + strand, within LU632_RS26030 at 14.561 kb on + strand, within LU632_RS26030 at 14.672 kb on - strand, within LU632_RS26030 at 14.820 kb on - strand, within LU632_RS26030 at 14.842 kb on + strand, within LU632_RS26030 at 14.842 kb on + strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.869 kb on + strand, within LU632_RS26030 at 14.870 kb on - strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.891 kb on - strand, within LU632_RS26030 at 14.905 kb on - strand, within LU632_RS26030 at 14.944 kb on - strand, within LU632_RS26030 at 15.000 kb on - strand, within LU632_RS26030 at 15.035 kb on + strand, within LU632_RS26030 at 15.036 kb on - strand, within LU632_RS26030 at 15.096 kb on - strand, within LU632_RS26030 at 15.105 kb on + strand, within LU632_RS26030 at 15.106 kb on - strand, within LU632_RS26030 at 15.106 kb on - strand, within LU632_RS26030 at 15.119 kb on + strand, within LU632_RS26030 at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.181 kb on - strand at 15.181 kb on - strand at 15.181 kb on - strand at 15.202 kb on - strand at 15.279 kb on + strand at 15.279 kb on + strand at 15.280 kb on - strand at 15.280 kb on - strand at 15.288 kb on + strand at 15.328 kb on + strand, within LU632_RS26035 at 15.328 kb on + strand, within LU632_RS26035 at 15.329 kb on - strand, within LU632_RS26035 at 15.398 kb on - strand, within LU632_RS26035 at 15.416 kb on + strand, within LU632_RS26035 at 15.426 kb on + strand, within LU632_RS26035 at 15.426 kb on + strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.475 kb on + strand, within LU632_RS26035 at 15.476 kb on - strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.573 kb on + strand, within LU632_RS26035 at 15.573 kb on + strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.645 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.712 kb on + strand at 15.712 kb on + strand at 15.712 kb on + strand at 15.712 kb on + strand at 15.713 kb on - strand at 15.713 kb on - strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.762 kb on - strand at 15.762 kb on - strand at 15.817 kb on + strand at 15.899 kb on + strand at 15.900 kb on - strand at 16.017 kb on + strand, within LU632_RS26040 at 16.072 kb on + strand, within LU632_RS26040 at 16.072 kb on + strand, within LU632_RS26040 at 16.109 kb on + strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.153 kb on - strand, within LU632_RS26040 at 16.230 kb on - strand, within LU632_RS26040 at 16.249 kb on + strand, within LU632_RS26040
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 13,511 + LU632_RS26020 0.54 +0.0 14,296 - +0.3 14,309 + +2.2 14,309 + +0.3 14,310 - -0.6 14,320 + +0.3 14,320 + -2.1 14,320 + -1.0 14,320 + +0.9 14,321 - -2.0 14,371 + +0.5 14,371 + +0.4 14,371 + +0.1 14,372 - +1.3 14,372 - +0.3 14,379 + +0.3 14,380 - -0.4 14,412 - LU632_RS26030 0.11 +1.2 14,456 + LU632_RS26030 0.16 -0.3 14,459 + LU632_RS26030 0.16 +2.5 14,460 - LU632_RS26030 0.16 -1.5 14,460 - LU632_RS26030 0.16 +0.4 14,461 + LU632_RS26030 0.16 +2.0 14,502 - LU632_RS26030 0.21 -0.4 14,510 + LU632_RS26030 0.22 -0.8 14,510 + LU632_RS26030 0.22 +0.6 14,561 + LU632_RS26030 0.27 -0.3 14,672 - LU632_RS26030 0.38 -0.6 14,820 - LU632_RS26030 0.54 -0.5 14,842 + LU632_RS26030 0.56 +0.5 14,842 + LU632_RS26030 0.56 -1.0 14,843 - LU632_RS26030 0.56 +0.8 14,843 - LU632_RS26030 0.56 -3.5 14,843 - LU632_RS26030 0.56 +1.6 14,843 - LU632_RS26030 0.56 +0.4 14,869 + LU632_RS26030 0.59 +1.3 14,870 - LU632_RS26030 0.59 -1.0 14,890 + LU632_RS26030 0.61 -2.0 14,890 + LU632_RS26030 0.61 -0.1 14,890 + LU632_RS26030 0.61 +1.3 14,891 - LU632_RS26030 0.61 +1.9 14,905 - LU632_RS26030 0.63 +0.7 14,944 - LU632_RS26030 0.67 +0.9 15,000 - LU632_RS26030 0.73 -0.4 15,035 + LU632_RS26030 0.76 -1.6 15,036 - LU632_RS26030 0.76 -3.0 15,096 - LU632_RS26030 0.83 -0.2 15,105 + LU632_RS26030 0.84 -1.6 15,106 - LU632_RS26030 0.84 +0.2 15,106 - LU632_RS26030 0.84 -0.6 15,119 + LU632_RS26030 0.85 -0.8 15,180 + +1.1 15,180 + -0.5 15,180 + -0.2 15,180 + +1.4 15,180 + +0.2 15,181 - +0.2 15,181 - -0.2 15,181 - -2.0 15,202 - +0.8 15,279 + -2.3 15,279 + +0.3 15,280 - -2.3 15,280 - -1.6 15,288 + +0.3 15,328 + LU632_RS26035 0.10 -0.9 15,328 + LU632_RS26035 0.10 +1.1 15,329 - LU632_RS26035 0.11 +0.2 15,398 - LU632_RS26035 0.25 -0.4 15,416 + LU632_RS26035 0.29 +2.0 15,426 + LU632_RS26035 0.31 -0.7 15,426 + LU632_RS26035 0.31 -0.1 15,427 - LU632_RS26035 0.31 -0.2 15,427 - LU632_RS26035 0.31 -1.0 15,427 - LU632_RS26035 0.31 -0.8 15,475 + LU632_RS26035 0.41 -0.6 15,476 - LU632_RS26035 0.41 -3.2 15,491 + LU632_RS26035 0.44 -0.7 15,491 + LU632_RS26035 0.44 +0.6 15,491 + LU632_RS26035 0.44 -2.1 15,491 + LU632_RS26035 0.44 +0.7 15,491 + LU632_RS26035 0.44 +1.8 15,491 + LU632_RS26035 0.44 -0.9 15,492 - LU632_RS26035 0.44 -0.6 15,492 - LU632_RS26035 0.44 +0.5 15,492 - LU632_RS26035 0.44 +1.0 15,492 - LU632_RS26035 0.44 -0.5 15,492 - LU632_RS26035 0.44 -2.0 15,492 - LU632_RS26035 0.44 -1.7 15,573 + LU632_RS26035 0.61 +1.4 15,573 + LU632_RS26035 0.61 +1.7 15,574 - LU632_RS26035 0.61 -2.0 15,574 - LU632_RS26035 0.61 +0.0 15,574 - LU632_RS26035 0.61 -0.7 15,574 - LU632_RS26035 0.61 -2.2 15,574 - LU632_RS26035 0.61 -0.6 15,645 + LU632_RS26035 0.76 -1.0 15,661 + LU632_RS26035 0.79 +0.8 15,661 + LU632_RS26035 0.79 +3.2 15,661 + LU632_RS26035 0.79 -2.0 15,712 + +0.3 15,712 + +1.6 15,712 + -0.5 15,712 + -1.4 15,713 - -1.1 15,713 - +0.0 15,761 + +0.4 15,761 + -1.4 15,761 + +1.0 15,761 + -1.4 15,761 + +5.4 15,761 + -2.2 15,761 + +1.1 15,762 - -0.1 15,762 - +0.0 15,817 + +0.0 15,899 + -2.3 15,900 - -1.0 16,017 + LU632_RS26040 0.19 -1.0 16,072 + LU632_RS26040 0.23 -1.5 16,072 + LU632_RS26040 0.23 -1.6 16,109 + LU632_RS26040 0.26 +1.0 16,110 - LU632_RS26040 0.26 -1.6 16,110 - LU632_RS26040 0.26 -3.2 16,110 - LU632_RS26040 0.26 +0.5 16,110 - LU632_RS26040 0.26 -1.0 16,153 - LU632_RS26040 0.30 -2.6 16,230 - LU632_RS26040 0.36 -0.2 16,249 + LU632_RS26040 0.37 +0.8
Or see this region's nucleotide sequence