Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25655 and LU632_RS25660 are separated by 60 nucleotides LU632_RS25660 and LU632_RS25665 are separated by 69 nucleotides LU632_RS25665 and LU632_RS25670 are separated by 44 nucleotides LU632_RS25670 and LU632_RS25675 are separated by 5 nucleotides
LU632_RS25655: LU632_RS25655 - type II secretion system F family protein, at 61,207 to 62,340
_RS25655
LU632_RS25660: LU632_RS25660 - prepilin, at 62,401 to 62,994
_RS25660
LU632_RS25665: LU632_RS25665 - lytic transglycosylase domain-containing protein, at 63,064 to 63,540
_RS25665
LU632_RS25670: LU632_RS25670 - prepilin peptidase, at 63,585 to 64,202
_RS25670
LU632_RS25675: LU632_RS25675 - shufflon system plasmid conjugative transfer pilus tip adhesin PilV, at 64,208 to 65,599
_RS25675
Position (kb) 63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 62.223 kb on + strand, within LU632_RS25655 at 62.276 kb on - strand at 62.289 kb on - strand at 62.291 kb on + strand at 62.292 kb on - strand at 62.300 kb on + strand at 62.301 kb on - strand at 62.301 kb on - strand at 62.361 kb on + strand at 62.361 kb on + strand at 62.361 kb on + strand at 62.362 kb on - strand at 62.362 kb on - strand at 62.386 kb on + strand at 62.387 kb on - strand at 62.450 kb on + strand at 62.451 kb on - strand at 62.493 kb on + strand, within LU632_RS25660 at 62.494 kb on - strand, within LU632_RS25660 at 62.503 kb on + strand, within LU632_RS25660 at 62.503 kb on + strand, within LU632_RS25660 at 62.503 kb on + strand, within LU632_RS25660 at 62.503 kb on + strand, within LU632_RS25660 at 62.503 kb on + strand, within LU632_RS25660 at 62.504 kb on - strand, within LU632_RS25660 at 62.504 kb on - strand, within LU632_RS25660 at 62.601 kb on - strand, within LU632_RS25660 at 62.657 kb on + strand, within LU632_RS25660 at 62.658 kb on - strand, within LU632_RS25660 at 62.731 kb on - strand, within LU632_RS25660 at 62.781 kb on + strand, within LU632_RS25660 at 62.781 kb on + strand, within LU632_RS25660 at 62.781 kb on + strand, within LU632_RS25660 at 62.803 kb on + strand, within LU632_RS25660 at 62.804 kb on - strand, within LU632_RS25660 at 62.993 kb on - strand at 63.037 kb on + strand at 63.038 kb on - strand at 63.038 kb on - strand at 63.038 kb on - strand at 63.064 kb on - strand at 63.084 kb on + strand at 63.085 kb on - strand at 63.128 kb on + strand, within LU632_RS25665 at 63.128 kb on + strand, within LU632_RS25665 at 63.198 kb on - strand, within LU632_RS25665 at 63.212 kb on + strand, within LU632_RS25665 at 63.225 kb on + strand, within LU632_RS25665 at 63.231 kb on + strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.234 kb on + strand, within LU632_RS25665 at 63.252 kb on + strand, within LU632_RS25665 at 63.253 kb on - strand, within LU632_RS25665 at 63.347 kb on + strand, within LU632_RS25665 at 63.347 kb on + strand, within LU632_RS25665 at 63.348 kb on - strand, within LU632_RS25665 at 63.366 kb on + strand, within LU632_RS25665 at 63.367 kb on - strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.444 kb on + strand, within LU632_RS25665 at 63.445 kb on - strand, within LU632_RS25665 at 63.445 kb on - strand, within LU632_RS25665 at 63.502 kb on + strand at 63.502 kb on + strand at 63.503 kb on - strand at 63.511 kb on + strand at 63.512 kb on - strand at 63.521 kb on + strand at 63.562 kb on + strand at 63.563 kb on - strand at 63.575 kb on - strand at 63.599 kb on + strand at 63.599 kb on + strand at 63.599 kb on + strand at 63.599 kb on + strand at 63.600 kb on - strand at 63.600 kb on - strand at 63.600 kb on - strand at 63.601 kb on + strand at 63.661 kb on + strand, within LU632_RS25670 at 63.661 kb on + strand, within LU632_RS25670 at 63.662 kb on - strand, within LU632_RS25670 at 63.662 kb on - strand, within LU632_RS25670 at 63.699 kb on - strand, within LU632_RS25670 at 63.748 kb on + strand, within LU632_RS25670 at 63.925 kb on - strand, within LU632_RS25670 at 63.925 kb on - strand, within LU632_RS25670 at 63.925 kb on - strand, within LU632_RS25670 at 63.996 kb on + strand, within LU632_RS25670 at 63.996 kb on + strand, within LU632_RS25670 at 63.996 kb on + strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 64.000 kb on + strand, within LU632_RS25670 at 64.000 kb on + strand, within LU632_RS25670 at 64.000 kb on + strand, within LU632_RS25670 at 64.073 kb on + strand, within LU632_RS25670 at 64.073 kb on + strand, within LU632_RS25670 at 64.074 kb on - strand, within LU632_RS25670 at 64.074 kb on - strand, within LU632_RS25670 at 64.094 kb on + strand, within LU632_RS25670 at 64.194 kb on - strand at 64.200 kb on + strand at 64.201 kb on - strand at 64.201 kb on - strand at 64.261 kb on - strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.297 kb on - strand at 64.297 kb on - strand at 64.297 kb on - strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.313 kb on + strand at 64.314 kb on - strand at 64.316 kb on - strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.323 kb on - strand at 64.323 kb on - strand at 64.323 kb on - strand at 64.391 kb on + strand, within LU632_RS25675 at 64.391 kb on + strand, within LU632_RS25675 at 64.508 kb on - strand, within LU632_RS25675 at 64.510 kb on + strand, within LU632_RS25675
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 62,223 + LU632_RS25655 0.90 +0.9 62,276 - +0.1 62,289 - +1.4 62,291 + +0.0 62,292 - +0.3 62,300 + -2.2 62,301 - +1.1 62,301 - +1.2 62,361 + -2.3 62,361 + +0.4 62,361 + +0.2 62,362 - +0.4 62,362 - +0.6 62,386 + +1.2 62,387 - -0.4 62,450 + -1.3 62,451 - +0.6 62,493 + LU632_RS25660 0.15 -1.2 62,494 - LU632_RS25660 0.16 +3.8 62,503 + LU632_RS25660 0.17 +0.2 62,503 + LU632_RS25660 0.17 -0.6 62,503 + LU632_RS25660 0.17 -0.3 62,503 + LU632_RS25660 0.17 +0.8 62,503 + LU632_RS25660 0.17 -1.0 62,504 - LU632_RS25660 0.17 +3.7 62,504 - LU632_RS25660 0.17 -0.9 62,601 - LU632_RS25660 0.34 -2.2 62,657 + LU632_RS25660 0.43 -3.0 62,658 - LU632_RS25660 0.43 +0.8 62,731 - LU632_RS25660 0.56 -1.3 62,781 + LU632_RS25660 0.64 +1.8 62,781 + LU632_RS25660 0.64 -1.8 62,781 + LU632_RS25660 0.64 -2.5 62,803 + LU632_RS25660 0.68 +1.8 62,804 - LU632_RS25660 0.68 -1.9 62,993 - -1.2 63,037 + -1.2 63,038 - -2.8 63,038 - -1.8 63,038 - -2.3 63,064 - -0.1 63,084 + -0.3 63,085 - -2.7 63,128 + LU632_RS25665 0.13 -2.4 63,128 + LU632_RS25665 0.13 +1.1 63,198 - LU632_RS25665 0.28 +0.5 63,212 + LU632_RS25665 0.31 +0.3 63,225 + LU632_RS25665 0.34 +0.3 63,231 + LU632_RS25665 0.35 -0.2 63,232 - LU632_RS25665 0.35 -0.0 63,232 - LU632_RS25665 0.35 +1.6 63,232 - LU632_RS25665 0.35 -0.7 63,232 - LU632_RS25665 0.35 +2.0 63,234 + LU632_RS25665 0.36 -0.2 63,252 + LU632_RS25665 0.39 -0.0 63,253 - LU632_RS25665 0.40 -0.3 63,347 + LU632_RS25665 0.59 -0.9 63,347 + LU632_RS25665 0.59 +1.8 63,348 - LU632_RS25665 0.60 -0.2 63,366 + LU632_RS25665 0.63 -3.1 63,367 - LU632_RS25665 0.64 +0.8 63,442 + LU632_RS25665 0.79 -0.6 63,442 + LU632_RS25665 0.79 -0.2 63,442 + LU632_RS25665 0.79 +0.6 63,442 + LU632_RS25665 0.79 +0.2 63,442 + LU632_RS25665 0.79 -0.9 63,442 + LU632_RS25665 0.79 -0.6 63,442 + LU632_RS25665 0.79 -0.5 63,442 + LU632_RS25665 0.79 +0.6 63,442 + LU632_RS25665 0.79 -1.8 63,443 - LU632_RS25665 0.79 -0.5 63,443 - LU632_RS25665 0.79 -0.3 63,443 - LU632_RS25665 0.79 -1.9 63,443 - LU632_RS25665 0.79 +0.6 63,443 - LU632_RS25665 0.79 -0.6 63,443 - LU632_RS25665 0.79 -0.6 63,444 + LU632_RS25665 0.80 +2.9 63,445 - LU632_RS25665 0.80 +0.0 63,445 - LU632_RS25665 0.80 +0.4 63,502 + -0.4 63,502 + +0.2 63,503 - -0.6 63,511 + +2.2 63,512 - -0.1 63,521 + +0.8 63,562 + -0.9 63,563 - -0.7 63,575 - -0.3 63,599 + +1.3 63,599 + +1.5 63,599 + -2.6 63,599 + +1.6 63,600 - -1.2 63,600 - +0.2 63,600 - -2.0 63,601 + -1.1 63,661 + LU632_RS25670 0.12 +0.5 63,661 + LU632_RS25670 0.12 +0.5 63,662 - LU632_RS25670 0.12 -0.4 63,662 - LU632_RS25670 0.12 +0.3 63,699 - LU632_RS25670 0.18 +1.4 63,748 + LU632_RS25670 0.26 -2.0 63,925 - LU632_RS25670 0.55 +0.2 63,925 - LU632_RS25670 0.55 -1.5 63,925 - LU632_RS25670 0.55 +0.1 63,996 + LU632_RS25670 0.67 +2.4 63,996 + LU632_RS25670 0.67 -0.1 63,996 + LU632_RS25670 0.67 -2.8 63,997 - LU632_RS25670 0.67 -1.3 63,997 - LU632_RS25670 0.67 -0.5 63,997 - LU632_RS25670 0.67 -0.2 63,997 - LU632_RS25670 0.67 +0.7 64,000 + LU632_RS25670 0.67 -0.9 64,000 + LU632_RS25670 0.67 +0.1 64,000 + LU632_RS25670 0.67 -0.5 64,073 + LU632_RS25670 0.79 -1.0 64,073 + LU632_RS25670 0.79 -1.0 64,074 - LU632_RS25670 0.79 -0.8 64,074 - LU632_RS25670 0.79 +0.8 64,094 + LU632_RS25670 0.82 -0.3 64,194 - +0.7 64,200 + +0.0 64,201 - -1.0 64,201 - +0.1 64,261 - +0.8 64,296 + +0.8 64,296 + -0.2 64,296 + +1.5 64,296 + -2.8 64,296 + -0.7 64,296 + -0.3 64,296 + +1.0 64,296 + -0.0 64,296 + -1.8 64,296 + +0.6 64,296 + +0.4 64,297 - -2.5 64,297 - -1.4 64,297 - -0.9 64,298 + +2.1 64,298 + -1.2 64,298 + +0.0 64,298 + +1.2 64,298 + +0.5 64,298 + -0.2 64,298 + -0.4 64,298 + -0.2 64,298 + -0.5 64,298 + -3.4 64,299 - -1.3 64,299 - +0.0 64,299 - +0.6 64,299 - -0.5 64,299 - +2.7 64,299 - +2.4 64,299 - +0.2 64,299 - -0.2 64,313 + +0.8 64,314 - +0.3 64,316 - +1.9 64,322 + +0.2 64,322 + -2.0 64,322 + -2.0 64,322 + -0.0 64,322 + -0.7 64,322 + +0.5 64,322 + +0.5 64,322 + -0.4 64,322 + +1.8 64,323 - +0.4 64,323 - +0.5 64,323 - -0.3 64,391 + LU632_RS25675 0.13 -0.5 64,391 + LU632_RS25675 0.13 -0.8 64,508 - LU632_RS25675 0.22 -0.6 64,510 + LU632_RS25675 0.22 +0.3
Or see this region's nucleotide sequence