Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25350 and LU632_RS25355 are separated by 60 nucleotides LU632_RS25355 and traO are separated by 2 nucleotides traO and LU632_RS25365 are separated by 11 nucleotides LU632_RS25365 and traQ overlap by 1 nucleotides
LU632_RS25350: LU632_RS25350 - hypothetical protein, at 4,792 to 5,073
_RS25350
LU632_RS25355: LU632_RS25355 - DotH/IcmK family type IV secretion protein, at 5,134 to 5,799
_RS25355
LU632_RS25360: traO - conjugal transfer protein TraO, at 5,802 to 7,061
traO
LU632_RS25365: LU632_RS25365 - hypothetical protein, at 7,073 to 7,867
_RS25365
LU632_RS25370: traQ - conjugal transfer protein TraQ, at 7,867 to 8,394
traQ
Position (kb) 5
6
7
8 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4.977 kb on + strand, within LU632_RS25350 at 4.988 kb on + strand, within LU632_RS25350 at 5.272 kb on + strand, within LU632_RS25355 at 5.272 kb on + strand, within LU632_RS25355 at 5.275 kb on - strand, within LU632_RS25355 at 5.275 kb on - strand, within LU632_RS25355 at 5.578 kb on - strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.651 kb on - strand, within LU632_RS25355 at 5.651 kb on - strand, within LU632_RS25355 at 5.722 kb on + strand, within LU632_RS25355 at 5.722 kb on + strand, within LU632_RS25355 at 5.723 kb on - strand, within LU632_RS25355 at 5.723 kb on - strand, within LU632_RS25355 at 5.786 kb on + strand at 5.787 kb on - strand at 5.787 kb on - strand at 5.787 kb on - strand at 5.787 kb on - strand at 5.798 kb on - strand at 5.848 kb on + strand at 5.849 kb on - strand at 5.858 kb on + strand at 5.994 kb on + strand, within traO at 6.007 kb on + strand, within traO at 6.007 kb on + strand, within traO at 6.008 kb on - strand, within traO at 6.239 kb on - strand, within traO at 6.277 kb on + strand, within traO at 6.278 kb on - strand, within traO at 6.432 kb on - strand, within traO at 6.528 kb on + strand, within traO at 6.529 kb on - strand, within traO at 6.545 kb on - strand, within traO at 6.545 kb on - strand, within traO at 6.585 kb on - strand, within traO at 6.611 kb on + strand, within traO at 6.611 kb on + strand, within traO at 6.612 kb on - strand, within traO at 6.626 kb on + strand, within traO at 6.695 kb on + strand, within traO at 6.695 kb on + strand, within traO at 6.695 kb on + strand, within traO at 6.696 kb on - strand, within traO at 6.696 kb on - strand, within traO at 6.754 kb on - strand, within traO at 6.754 kb on - strand, within traO at 6.754 kb on - strand, within traO at 6.767 kb on + strand, within traO at 6.968 kb on - strand at 7.051 kb on + strand at 7.051 kb on + strand at 7.052 kb on - strand at 7.052 kb on - strand at 7.052 kb on - strand at 7.052 kb on - strand at 7.212 kb on - strand, within LU632_RS25365 at 7.251 kb on + strand, within LU632_RS25365 at 7.252 kb on - strand, within LU632_RS25365 at 7.258 kb on - strand, within LU632_RS25365 at 7.265 kb on + strand, within LU632_RS25365 at 7.265 kb on + strand, within LU632_RS25365 at 7.360 kb on - strand, within LU632_RS25365 at 7.495 kb on - strand, within LU632_RS25365 at 7.612 kb on - strand, within LU632_RS25365 at 7.695 kb on + strand, within LU632_RS25365 at 7.695 kb on + strand, within LU632_RS25365 at 7.695 kb on + strand, within LU632_RS25365 at 7.696 kb on - strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.932 kb on - strand, within traQ at 8.010 kb on + strand, within traQ
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 4,977 + LU632_RS25350 0.66 -2.0 4,988 + LU632_RS25350 0.70 +0.5 5,272 + LU632_RS25355 0.21 -0.8 5,272 + LU632_RS25355 0.21 -0.9 5,275 - LU632_RS25355 0.21 +0.6 5,275 - LU632_RS25355 0.21 -1.2 5,578 - LU632_RS25355 0.67 -3.0 5,650 + LU632_RS25355 0.77 -0.3 5,650 + LU632_RS25355 0.77 +1.3 5,650 + LU632_RS25355 0.77 -0.2 5,650 + LU632_RS25355 0.77 -0.1 5,650 + LU632_RS25355 0.77 +0.5 5,650 + LU632_RS25355 0.77 -1.2 5,651 - LU632_RS25355 0.78 -0.6 5,651 - LU632_RS25355 0.78 -1.5 5,722 + LU632_RS25355 0.88 +1.3 5,722 + LU632_RS25355 0.88 +0.7 5,723 - LU632_RS25355 0.88 +1.0 5,723 - LU632_RS25355 0.88 +2.8 5,786 + -0.2 5,787 - +0.2 5,787 - +0.5 5,787 - +0.8 5,787 - -1.4 5,798 - -1.0 5,848 + +0.1 5,849 - +0.6 5,858 + +2.2 5,994 + traO LU632_RS25360 0.15 -0.1 6,007 + traO LU632_RS25360 0.16 -0.5 6,007 + traO LU632_RS25360 0.16 -0.6 6,008 - traO LU632_RS25360 0.16 +1.0 6,239 - traO LU632_RS25360 0.35 +2.7 6,277 + traO LU632_RS25360 0.38 -1.5 6,278 - traO LU632_RS25360 0.38 -1.5 6,432 - traO LU632_RS25360 0.50 +0.5 6,528 + traO LU632_RS25360 0.58 +0.6 6,529 - traO LU632_RS25360 0.58 -1.2 6,545 - traO LU632_RS25360 0.59 -0.1 6,545 - traO LU632_RS25360 0.59 -0.9 6,585 - traO LU632_RS25360 0.62 -1.1 6,611 + traO LU632_RS25360 0.64 +0.5 6,611 + traO LU632_RS25360 0.64 -2.5 6,612 - traO LU632_RS25360 0.64 -0.8 6,626 + traO LU632_RS25360 0.65 -0.5 6,695 + traO LU632_RS25360 0.71 +0.6 6,695 + traO LU632_RS25360 0.71 -0.6 6,695 + traO LU632_RS25360 0.71 -1.1 6,696 - traO LU632_RS25360 0.71 -0.6 6,696 - traO LU632_RS25360 0.71 -0.6 6,754 - traO LU632_RS25360 0.76 -1.2 6,754 - traO LU632_RS25360 0.76 -0.9 6,754 - traO LU632_RS25360 0.76 -0.1 6,767 + traO LU632_RS25360 0.77 +0.1 6,968 - +1.0 7,051 + -1.7 7,051 + +0.8 7,052 - +0.6 7,052 - -0.8 7,052 - -1.8 7,052 - +2.4 7,212 - LU632_RS25365 0.17 +0.8 7,251 + LU632_RS25365 0.22 -0.6 7,252 - LU632_RS25365 0.23 +0.8 7,258 - LU632_RS25365 0.23 +0.4 7,265 + LU632_RS25365 0.24 +0.8 7,265 + LU632_RS25365 0.24 +0.4 7,360 - LU632_RS25365 0.36 -0.1 7,495 - LU632_RS25365 0.53 +3.2 7,612 - LU632_RS25365 0.68 +1.3 7,695 + LU632_RS25365 0.78 +0.5 7,695 + LU632_RS25365 0.78 +0.2 7,695 + LU632_RS25365 0.78 +0.1 7,696 - LU632_RS25365 0.78 -1.0 7,714 + LU632_RS25365 0.81 -0.5 7,714 + LU632_RS25365 0.81 +0.4 7,714 + LU632_RS25365 0.81 -0.8 7,714 + LU632_RS25365 0.81 -0.5 7,714 + LU632_RS25365 0.81 +0.1 7,715 - LU632_RS25365 0.81 +0.7 7,715 - LU632_RS25365 0.81 +1.1 7,715 - LU632_RS25365 0.81 +0.3 7,715 - LU632_RS25365 0.81 -1.1 7,932 - traQ LU632_RS25370 0.12 -0.6 8,010 + traQ LU632_RS25370 0.27 +0.9
Or see this region's nucleotide sequence