Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24625
Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | plant=Squash; plant sample=QP2; plant location=NA |
---|---|---|---|---|---|
remove | |||||
4,691,464 | - | +0.3 | |||
4,691,612 | - | +0.4 | |||
4,691,887 | + | -1.3 | |||
4,691,887 | + | +1.1 | |||
4,691,889 | + | -0.9 | |||
4,692,851 | + | -0.5 | |||
4,692,867 | + | +0.5 | |||
4,692,868 | - | +0.7 | |||
4,692,869 | + | -0.8 | |||
4,692,870 | - | -0.1 | |||
4,692,870 | - | +3.2 | |||
4,693,214 | + | LU632_RS24630 | 0.41 | -0.1 | |
4,693,215 | - | LU632_RS24630 | 0.41 | +0.4 | |
4,693,220 | - | LU632_RS24630 | 0.42 | +0.7 | |
4,693,237 | - | LU632_RS24630 | 0.44 | -0.1 | |
4,693,301 | - | LU632_RS24630 | 0.53 | +0.9 | |
4,693,301 | - | LU632_RS24630 | 0.53 | +1.3 | |
4,693,445 | + | LU632_RS24630 | 0.72 | -0.3 | |
4,693,445 | + | LU632_RS24630 | 0.72 | -0.6 | |
4,693,564 | - | LU632_RS24630 | 0.88 | +2.0 |
Or see this region's nucleotide sequence