Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24330 and LU632_RS24335 are separated by 93 nucleotides LU632_RS24335 and LU632_RS24340 are separated by 69 nucleotides LU632_RS24340 and LU632_RS24345 are separated by 2 nucleotides
LU632_RS24330: LU632_RS24330 - transposase, at 4,642,061 to 4,643,182
_RS24330
LU632_RS24335: LU632_RS24335 - protein rep, at 4,643,276 to 4,643,695
_RS24335
LU632_RS24340: LU632_RS24340 - pesticin C-terminus-like muramidase, at 4,643,765 to 4,644,367
_RS24340
LU632_RS24345: LU632_RS24345 - hypothetical protein, at 4,644,370 to 4,644,783
_RS24345
Position (kb) 4643
4644 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4642.434 kb on - strand, within LU632_RS24330 at 4643.121 kb on + strand at 4643.121 kb on + strand at 4643.164 kb on - strand at 4643.256 kb on - strand at 4643.353 kb on + strand, within LU632_RS24335 at 4643.354 kb on - strand, within LU632_RS24335 at 4643.354 kb on - strand, within LU632_RS24335 at 4643.420 kb on + strand, within LU632_RS24335 at 4643.441 kb on + strand, within LU632_RS24335 at 4643.441 kb on + strand, within LU632_RS24335 at 4643.441 kb on + strand, within LU632_RS24335 at 4643.468 kb on + strand, within LU632_RS24335 at 4643.468 kb on + strand, within LU632_RS24335 at 4643.529 kb on + strand, within LU632_RS24335 at 4643.551 kb on + strand, within LU632_RS24335 at 4643.551 kb on + strand, within LU632_RS24335 at 4643.866 kb on - strand, within LU632_RS24340 at 4644.088 kb on - strand, within LU632_RS24340 at 4644.090 kb on + strand, within LU632_RS24340
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 4,642,434 - LU632_RS24330 0.33 +0.1 4,643,121 + -0.3 4,643,121 + -0.4 4,643,164 - +4.0 4,643,256 - -0.6 4,643,353 + LU632_RS24335 0.18 +0.8 4,643,354 - LU632_RS24335 0.19 -0.8 4,643,354 - LU632_RS24335 0.19 -0.2 4,643,420 + LU632_RS24335 0.34 +3.1 4,643,441 + LU632_RS24335 0.39 -0.7 4,643,441 + LU632_RS24335 0.39 -0.4 4,643,441 + LU632_RS24335 0.39 +0.5 4,643,468 + LU632_RS24335 0.46 +0.7 4,643,468 + LU632_RS24335 0.46 -0.7 4,643,529 + LU632_RS24335 0.60 -0.2 4,643,551 + LU632_RS24335 0.65 -1.0 4,643,551 + LU632_RS24335 0.65 +0.4 4,643,866 - LU632_RS24340 0.17 +1.0 4,644,088 - LU632_RS24340 0.54 +0.3 4,644,090 + LU632_RS24340 0.54 -1.9
Or see this region's nucleotide sequence